Query= MSMg01no454_h18.b1 MSMg01no454_h18.b1 CHROMAT_FILE:
MSMg01no454_h18.b1 PHD_FILE: MSMg01no454_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:41 2005
(224 letters)
>mm_chr9_30712292_30712915
Length = 624
Score = 402 bits (208), Expect = e-117
Identities = 220/224 (98%)
Strand = Plus / Minus
Query: 1 ctggaggtggtgacatattgcttatggcacgttccaggctgctttaatcttgggaggtgg 60
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 424 ctggaggtggagacatattgcttatggcgcgttccaggctgctttaatcttgggaggtgg 365
Query: 61 gggatgactcccacactgtcatggaggcagaggggctttcatagctgggcatccttggga 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 364 gggatgactcccacactgtcatggaggcagaggggctttcagagctgggcatccttggga 305
Query: 121 ggatgctgtcttttgttccttcctgggctcctcttttcagctgtctttatgtgctttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggatgctgtcttttgttccttcctgggctcctcttttcagctgtctttatgtgctttctc 245
Query: 181 cctgtccagcctctggcaagagcttccggtaagagcaatgtgaa 224
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 244 cctgtccagcctctggcaagagcttccgggaagagcaatgtgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_h18.g1 MSMg01no454_h18.g1 CHROMAT_FILE:
MSMg01no454_h18.g1 PHD_FILE: MSMg01no454_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:42 2005
(450 letters)
>mm_chr9_30539214_30540061
Length = 848
Score = 832 bits (430), Expect = 0.0
Identities = 445/450 (98%), Gaps = 2/450 (0%)
Strand = Plus / Plus
Query: 1 ctgaagagcatcacatgactagaggccccatgatgtgtcaccaaagatactagactataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaagagcatcacatgactagaggccccatgatgtgtcaccaaagatactagactataa 260
Query: 61 ataaaggataaagcatgagagaaaggtcaagctccaggaaaagacttcacataaatcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaggataaagcatgagagaaaggtcaagctccaggaaaagacttcacataaatcctc 320
Query: 121 gtgatccctgttgttccatctaggaggcgattaagtgtaaaatactgatcttgaatggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgatccctgttgttccatctaggaggcgattaagtgtaaaatactgatcttgaatggac 380
Query: 181 tccagccaaaattcacacagcttaaaggctttctggaaggccctgtttttttcaaaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 381 tccagccaaaattcacacagcttaaaggctttctggaaggccctgtttttt-caaag-aa 438
Query: 241 gttgtttatttatagcagcactggtgggtgatcttaaatgaacaggggtgggtaagcagt 300
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gttggttagttatagcagcactggtgggtgatcttaaatgaacaggggtgggtaagcagt 498
Query: 301 ttaatgaaccaagtgagctattccagttctagctgaaaattggtatccaatctgttgtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttaatgaaccaagtgagctattccagttctagctgaaaattggtatccaatctgttgtaa 558
Query: 361 agtagatgttggttctaggacacagacagtatagtcgtagcaggtagtagtataggtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtagatgttggttctaggacacagacagtatagtcgtagcaggtagtagtataggtgtg 618
Query: 421 ttgaaatgagaggagttttttcttatatac 450
|||||||||||||||||||||||||||||
Sbjct: 619 ctgaaatgagaggagttttttcttatatac 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space: 368720
Effective search space used: 368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
