BAC Information

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BAC

Clone NameMSMg01-454L18
Chromosome9 (Build37)
Map Location 12,422,562 - 12,422,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989, LOC622505
Downstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454L18.T7 (MSMg01no454_l18.b1)MSMg01-454L18.TJ (MSMg01no454_l18.g1)
ACCAG541440AG541441
length745745
length of high quality
(start - end)
387 (70 - 456)465 (69 - 533)
definitionCHROMAT_FILE: MSMg01no454_l18.b1 PHD_FILE: MSMg01no454_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:02 2005CHROMAT_FILE: MSMg01no454_l18.g1 PHD_FILE: MSMg01no454_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGGCGCGG
AATTCTTTCTTCCCTACATTTTATTTACCTCCAAAATGTGTATTTTTCAT
GGTGAAATGTATATGAGTACGTACCTCAGGAGACCAGAAAAGAATGTTGG
ATTCTGGAGCAGGGATCCAGGTGATCAAGAGCTACTCGATATGAGTGATG
GAAACTGTCTTTTGAAGAACAGTAAGCAGTTGTATCCACAGAGCCATGTC
CTAGACATGGCTGATTTAAAAATAAGCTACAGAATATCATTAAGGAACGC
TAATAGCTGGTGTTCCTTTTCATTTATGGGGTGGAGGAATAGTTTGGCTG
CATTTCAGACTGTTACACAGTAATCAGTTCCTGTGCTCACAAAATAAAAA
ACAAAAACAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAG
AGAGAGGTAGAGACACTTCCCTTTTCCTTTTTCCTCTTCTTCTTTTTTTT
TCTCTTTTTTCTTTTTTCTCTCCCTTTTCTTTTTTCGTTTTTTCGCTCCC
TTTCCCTTTTTTTTTCTTCCCCTCCGCTACTCTCCTCACTCTCCTTTCCT
TTACTCCCCTTACATCCCTCCTAACTTTCTCCCCCCGCCCTCTTTTTTTT
TTTTTCCCTCATACCCTGAACTTTTCGCCATTCTTTTTTTTTTCTCACTC
CTCCCCTCTTTTCCCTCATTTTTGTTCCTCTATCCCCTCTTTTTN
ATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACACCGTTTTTTAATGG
GGTTATTTGAATTTCTGGCGTCCAGATTCTTGAGCTTTGTATATATTGGA
TATTAGTCCCTTATCAGATTTAGGATTGGTCAAAATCCTTTCTCAATCTG
TTGGTGGCCTTTATGTCTATTGACAGTATCTTTTGCCTTACAGAATCTTT
GCAATTTAATGAGGTTCCATTTGTCAATTCTTGATCTTACATCACAAGTC
ATTGCTCTTCTGTTCTTGAATTTTTCCCCTGTGCCCCTATCTTCAAGGCT
TTTCCCCACTTTTTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGAGGA
AGTCTATGATCCACGTTGACTTGAGTTTTGTACAAGGAGATAAGCATGGA
TAAATTCACATTCTTCTACATGAGAACTGCCAGTTGTGTCAGCACCATTT
GTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAA
AGATAAAGTGACCATAGGTGTGTGGATTCATTTCTGAGGCTTCAATTCTA
TTCCCTTGATCTACCTGGCTGTTTTTGTACCAGAACATGCAGGGATTTGT
TTGTTTGCTTGGTTGCCCCGCTTGTTTATTTTACCCCTCTCCCACTCCCT
TCTTTCTATTTTTTTCCCCCCCCCTTTTATTCTTATTCTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_l18.b1 MSMg01no454_l18.b1 CHROMAT_FILE:
MSMg01no454_l18.b1 PHD_FILE: MSMg01no454_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:02 2005
         (387 letters)



>mm_chr9_12422402_12423188
          Length = 787

 Score =  658 bits (340), Expect = 0.0
 Identities = 372/384 (96%), Gaps = 4/384 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatttacctccaaaatgtgtatttttcatggtgaaatgtatatgagtacgtacctcag 60
           ||||||||||||||||||||||||||||||||||||| ||| |||||||  |||||||||
Sbjct: 542 tttatttacctccaaaatgtgtatttttcatggtgaagtgtgtatgagtgggtacctcag 483

                                                                       
Query: 61  gagaccagaaaagaatgttggattctggagcagggatccaggtgatcaagagctactcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gagaccagaaaagaatgttggattctggagcagggatccaggtgatcaagagctactcga 423

                                                                       
Query: 121 tatgagtgatggaaactgtcttttgaagaacagtaagcagttgtatccacagagccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatgagtgatggaaactgtcttttgaagaacagtaagcagttgtatccacagagccatgt 363

                                                                       
Query: 181 cctagacatggctgatttaaaaataagctacagaatatcattaaggaacgctaatagctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 362 cctagacatggctgatttaaaaataagctacagaatatcattaaggaacgctaataactg 303

                                                                       
Query: 241 gtgttcctttt--catttatggggtggaggaatagtttggctgcatttcagactgttaca 298
           ||||||  | |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgttc--tgtggcatttatggggtggaggaatagtttggctgcatttcagactgttaca 245

                                                                       
Query: 299 cagtaatcagttcctgtgctcacaaaataaaaaacaaaaacaaaaagagagagagagaga 358
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 cagtaatcagttcctgtgctcacaaaataaaaaacaaaaacaaagagagagagagagaga 185

                                   
Query: 359 gagagagagagagagagggagaga 382
           ||||||||||||||||| ||||||
Sbjct: 184 gagagagagagagagagagagaga 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)