BAC Information

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BAC

Clone NameMSMg01-455D05
Chromosome9 (Build37)
Map Location 18,233,880 - 18,234,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps
Downstream geneMbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455D05.T7 (MSMg01no455_d05.b1)MSMg01-455D05.TJ (MSMg01no455_d05.g1)
ACCAG541796AG541797
length712722
length of high quality
(start - end)
636 (77 - 712)541 (80 - 620)
definitionCHROMAT_FILE: MSMg01no455_d05.b1 PHD_FILE: MSMg01no455_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:38 2005CHROMAT_FILE: MSMg01no455_d05.g1 PHD_FILE: MSMg01no455_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATTTGCCGAATACAAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCATTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTTTGGAAATCAGTCTGGTGGTTC
CTCAGAAATTTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGTTCCA
CTATGTTCATAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCT
AGATGCCCCTCAACAGAGGAATAGATACAGAAAATGTGGTACATCTACAC
AATGGAGTCCTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTCAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATACCCAAGATATAAGATACNATTTTCTAAACACATGAAACT
CAAGAAAAATGA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTATATTTCCCCATTGAGA
AACTCCCCTGCTCCTGAGGTATAAAAGCCTTGTTTCCTTCGCATCTGATA
CTGACTTCTCAAACCCTACCTTAGGGGGAGGCAGCCCGAGCATGTGAATT
AAAAAGCTTGCTTTAATTAATTGCTTTTTAAAATTAATTTGGCCATAATG
ATTTGGGTGAATGATCTTTCTTCTTTCATCTTTGGATTTACAGCATACAC
ACACACACACACACACACACACACACACACACACACACATACACACACTC
GAGTGTACATAAAATCTCCCAGATATAAGACATGACTTATATAATTACCC
CTGTGTCTATCCACAGCTTAGAAAATGGGCTTATCTCCTTTAATAAAGAG
GTCACATCTAAAAGTTATTATGAAAGCACAAAGAGTTGAATGGAAACTAT
TCGTGATGTGAAAAATAGAATTTAATGAAGAAATTGAAGCACTAAAGAAA
ACCCAATTTGAAATAAAAGTGATAATGAAAGAATTAGGAAGTCAACAAAA
AAACCTTAGAGGAAACTCAACATCAGAGTAGAAGACATGGAAAATAGTAT
CTCAGGTGTTANAGAACAGATAGAANAAATGGATACCCTCGTCAAAGAAA
ATGTTAAAAATAATAAAAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_d05.g1 MSMg01no455_d05.g1 CHROMAT_FILE:
MSMg01no455_d05.g1 PHD_FILE: MSMg01no455_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:38 2005
         (541 letters)



>mm_chr9_18233502_18234442
          Length = 941

 Score =  938 bits (485), Expect = 0.0
 Identities = 521/541 (96%), Gaps = 14/541 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctatatttccccattgagaaactcccctgctcctgaggtataaaagccttgtttcctt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 905 acctatatttccccattgagaaacttccctgctcctgaggtataaaagccttgtttcctt 846

                                                                       
Query: 61  cgcatctgatactgacttctcaaaccctaccttagggggaggcagcccgagcatgtgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cgcatctgatactgacttctcaaaccctaccttagggggaggcagcccgagcatgtgaat 786

                                                                       
Query: 121 taaaaagcttgctttaattaattgctttttaaaattaatttggccataatgatttgggtg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 785 taaaaagcttgctttaattaattgcttttaaaaattaatttggccataatgatttgggtg 726

                                                                       
Query: 181 aatgatctttcttctttcatctttggatttacagcatacacacacacacacacacacaca 240
           ||||||||||||||||||||||||||||||||||            ||||||||||||||
Sbjct: 725 aatgatctttcttctttcatctttggatttacag------------cacacacacacaca 678

                                                                       
Query: 241 cacacacacacacacacacatacacacactcgagtgtacataaaatctcccagatataag 300
           |||||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||
Sbjct: 677 cacacacacatacacacac--acacacactcgagtgtacataaaatcccccagatataag 620

                                                                       
Query: 301 acatgacttatataattacccctgtgtctatccacagcttagaaaatgggcttatctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 619 acatgacttatataattacccctgtgtctatccacagcttagaaaatgggcttatcttct 560

                                                                       
Query: 361 ttaataaagaggtcacatctaaaagttattatgaaagcacaaagagttgaatggaaacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttaataaagaggtcacatctaaaagttattatgaaagcacaaagagttgaatggaaacta 500

                                                                       
Query: 421 ttcgtgatgtgaaaaatagaatttaatgaagaaattgaagcactaaagaaaacccaattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttcgtgatgtgaaaaatagaatttaatgaagaaattgaagcactaaagaaaacccaattt 440

                                                                       
Query: 481 gaaataaaagtgataatgaaagaattaggaagtcaacaaaaaaaccttagaggaaactca 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaaataaaagtgataataaaagaattaggaagtcaacaaaaaaaccttagaggaaactca 380

            
Query: 541 a 541
           |
Sbjct: 379 a 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)