BAC Information

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BAC

Clone NameMSMg01-455J22
Chromosome9 (Build37)
Map Location 51,039,934 - 51,196,453
singlet/doubletdoublet
Overlap genePou2af1, Gm684, 1810046K07Rik
Upstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825
Downstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455J22.T7 (MSMg01no455_j22.b1)MSMg01-455J22.TJ (MSMg01no455_j22.g1)
ACCAG542117AG542118
length736731
length of high quality
(start - end)		550 (47 - 596)489 (76 - 564)
definitionCHROMAT_FILE: MSMg01no455_j22.b1 PHD_FILE: MSMg01no455_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:11 2005CHROMAT_FILE: MSMg01no455_j22.g1 PHD_FILE: MSMg01no455_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,039,934 - 51,040,480)(51,195,965 - 51,196,453)
sequence
TATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGGTTTACAGTGGTCAGAGAAGTTGTCCCCAGATCAGAATTC
TGACTATAAGGAATAGCAAGAAAGGTAGAGAGGTGATACACGCAAGGGCA
TGCAGAGGAGTGTAACCAGGCCTTCTTGCTAGATCCAGTTTATATAGCTT
CAGAAAAATGAGTTTCTGGTAACTTTGGGAAGCCCTGTCACTTTTAGACA
TAGGAGAGAGGGCTTAATTATTTGAATTTAGTAGGGCCACGGAATGGTTG
GGGACAGAAGGAGTCTTGGGAGAAATACTCTAGGAGGTCTCACAGAGATT
CAAGTTCAAGTACAACTTAGTTAGACAGTAGAGGAAGTGGGCATTTTGTG
GTTGGGGGTATCTGAGAAGGGCCACAAGTTCAAGTGACATTCCCCTTCAT
AGCCACAGCTCCAGAGCAAGCTCCTGCCCCACCAAGGCCATACCAGGGCG
TTCGAGTCAAGGAGCCAGTGAAGGAGCTACTGAGAAGAAAGCGTGGCCAT
ACCAGCGTTGGGGCAGCTGGGCCACCGACCGCGGTGAGGAGCTACTGTGG
GCTGTGTGACTGCAGTGTGTGTGTGTGTGTGCAGGTGAACTTGGCAGGTT
GGTCAAAGGGATAAGGCAAGAGTGTCCTTTCTCTGACTCATGCTACTGAA
TGGGGGTTTATGAATTGCGGAGGTATTAAACGTGAA

CTCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGATCCATTACTCTCCCCAGTTCT
CAGTTTTCCTGACTTACAATATTTGCATGAATTTGTTGTTTCAATACAGA
GCTTCCAGACGCTGTATTCAGAGCATGTTGCCTGGATCAATGAATGTGGG
TTTCTCAGGAAGACAAGCCTTCATAGCTCTCATAGCACATGCCTGAGGCT
GGATTTGTACATATGATCATTATGCTTTCCACAGCCAGGATATCCCGGCT
GATAACAAGAGGAGAACGGACTTGTAAAACCTAATTAGGAAGGATCTGAG
TATGAGCTCAGGGTTCAGCTGATTGCAGAGATGCTACAGATGAAAACAGA
TGGCTGGGTTGGAGTCGGTACCCACAGGAGAGAAGCAGCTCCTGGGACTC
CTATTCTTTGTCACTTGTGGTACTTTTAGACCTTTTTTGATCGTTTGTTC
GTTTGTTTGTTTTGTTTTGTTTTTTGTTTTTCAAGACAGGGTTTCTCTGT
ATAGTCCTGTCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGGCTCAAA
CTCAGAAATCCCTGCCTCTGCCTCCCAAGTGATGTTAGTAAAGGCGTGTG
TCTCCACTGGCCAGCGACCTTTTATTATGTAGCTGAAAAATGTCCCCCTT
TGTGAATCCTCACCCCCTGATAAATACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_j22.b1 MSMg01no455_j22.b1 CHROMAT_FILE:
MSMg01no455_j22.b1 PHD_FILE: MSMg01no455_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:11 2005
         (550 letters)



>mm_chr9_51039731_51040680
          Length = 950

 Score =  980 bits (507), Expect = 0.0
 Identities = 537/547 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatggtttacagtggtcagagaagttgtccccagatcagaattctgactataa 63
           |||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 204 ggaattccattgcttacagtggtcagagaagttgcccccagatcagaattatgactataa 263

                                                                       
Query: 64  ggaatagcaagaaaggtagagaggtgatacacgcaagggcatgcagaggagtgtaaccag 123
           |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||
Sbjct: 264 ggaatagcaagaaaggtagagaggtgattcacgcaagggtatgcataggagtgtaacgag 323

                                                                       
Query: 124 gccttcttgctagatccagtttatatagcttcagaaaaatgagtttctggtaactttggg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 gccttcttgctagatccagtttatatagcttcagaaaaatgagtttctggtacctttggg 383

                                                                       
Query: 184 aagccctgtcacttttagacataggagagagggcttaattatttgaatttagtagggcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagccctgtcacttttagacataggagagagggcttaattatttgaatttagtagggcca 443

                                                                       
Query: 244 cggaatggttggggacagaaggagtcttgggagaaatactctaggaggtctcacagagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cggaatggttggggacagaaggagtcttgggagaaatactctaggaggtctcacagagat 503

                                                                       
Query: 304 tcaagttcaagtacaacttagttagacagtagaggaagtgggcattttgtggttgggggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaagttcaagtacaacttagttagacagtagaggaagtgggcattttgtggttgggggt 563

                                                                       
Query: 364 atctgagaagggccacaagttcaagtgacattccccttcatagccacagctccagagcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atctgagaagggccacaagttcaagtgacattccccttcatagccacagctccagagcaa 623

                                                                       
Query: 424 gctcctgccccaccaaggccataccagggcgttcgagtcaaggagccagtgaaggagcta 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 gctcctgccccaccaaggccataccagggtgttcgagtcaaggagccagtgaaggagcta 683

                                                                       
Query: 484 ctgagaagaaagcgtggccataccagcgttggggcagctgggccaccgaccgcggtgagg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgagaagaaagcgtggccataccagcgttggggcagctgggccaccgaccgcggtgagg 743

                  
Query: 544 agctact 550
           |||||||
Sbjct: 744 agctact 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_j22.g1 MSMg01no455_j22.g1 CHROMAT_FILE:
MSMg01no455_j22.g1 PHD_FILE: MSMg01no455_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:11 2005
         (489 letters)



>mm_chr9_51195808_51196696
          Length = 889

 Score =  884 bits (457), Expect = 0.0
 Identities = 481/489 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatccattactctccccagttctcagttttcctgacttacaatatttgcatgaatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tggatccattactctccccagttctcagttttcctgacttacaatatttgcatgaatttg 587

                                                                       
Query: 61  ttgtttcaatacagagcttccagacgctgtattcagagcatgttgcctggatcaatgaat 120
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 586 ttgtttcaatacagagctcccagacgctgtattcagagcatgttgcttggatcaatgaat 527

                                                                       
Query: 121 gtgggtttctcaggaagacaagccttcatagctctcatagcacatgcctgaggctggatt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 526 gtgggtttctcaggaagacaagccttcatagctttcatagcacatgcctgaggctggatt 467

                                                                       
Query: 181 tgtacatatgatcattatgctttccacagccaggatatcccggctgataacaagaggaga 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 466 tgtacatatgatcattatgctttccacagccaggatatccaggctgataacaagaggaga 407

                                                                       
Query: 241 acggacttgtaaaacctaattaggaaggatctgagtatgagctcagggttcagctgattg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acagacttgtaaaacctaattaggaaggatctgagtatgagctcagggttcagctgattg 347

                                                                       
Query: 301 cagagatgctacagatgaaaacagatggctgggttggagtcggtacccacaggagagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagagatgctacagatgaaaacagatggctgggttggagtcggtacccacaggagagaag 287

                                                                       
Query: 361 cagctcctgggactcctattctttgtcacttgtggtacttttagaccttttttgatcgtt 420
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 286 catctcctgggactcctattttttgtcacttgtggtacttttagaccttttttgatcgtt 227

                                                                       
Query: 421 tgttcgtttgtttgttttgttttgttttttgtttttcaagacagggtttctctgtatagt 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgtttgtttgtttgttttgttttgttttttgtttttcaagacagggtttctctgtatagt 167

                    
Query: 481 cctgtctgt 489
           |||||||||
Sbjct: 166 cctgtctgt 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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