BAC Information

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BAC

Clone NameMSMg01-455M12
Chromosome9 (Build37)
Map Location 115,016,863 - 115,017,156
singlet/doubletsinglet
Overlap geneOsbpl10
Upstream geneEG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813
Downstream geneLOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455M12.T7 (MSMg01no455_m12.b1)MSMg01-455M12.TJ (MSMg01no455_m12.g1)
ACCAG542240AG542241
length828688
length of high quality
(start - end)
169 (74 - 242)294 (290 - 583)
definitionCHROMAT_FILE: MSMg01no455_m12.b1 PHD_FILE: MSMg01no455_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:23 2005CHROMAT_FILE: MSMg01no455_m12.g1 PHD_FILE: MSMg01no455_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAACAGGATCC
GCGGAATTCACTTTGCAGACCAGGCTGGCCTCGAACTCATAAAGATCCTC
TTGCTTTTGCCTTCCAAATGCTGGCATTAACGGTGTGTGCCAACACTGCC
TAGGTGTTTTACTTTGTAAAAAAGTTAAAATTATTTATTACGTGTGTGTA
TATGTGTGTAAGAGTGAGTGTGTGAGTGTGTGTGTATGNNNNNGNTTTTT
TTTTTTNAGTGNATGTTTGNNTAGNGAGTAGTTTTTGTATTTGTTAATGG
AAGAAGGGGAGATTTAGATAATTTTAAAGAAGAAGAGAGGAAAATAAGAG
GAAAGATTTTTTTTTCTCCTTCTTATATTATGAGAGAATTCGCTCCCCTT
CGCGCCTTTTTTTTCGTTTTGTCCCCCCCCCATCTTCTTTTCCATTCTTT
TTTTCACACCCCTCTTATCCTTCTTTCTCTTCTCCACTATTTTTATTTTT
CTCTCCCTCCACGTTCGCTATATTATATCTTCTTCTGTTAATATTCCCCT
CCATTTTTTATTTGTTTTGCGTTATTTCTTTCCTTCCCTTACTTATTGTT
TTTATGCTTTCTAGTTTTTGCCTCTTATTCCCTTTCCCATCTCTTTCCCG
TTCATCTTACCCATTTTCCATCTAATTATTTTACTTCACCTTCCCTGTTA
CCCCCTTTTATCTTTTTCTCCCTTCTTCGTCTTGCTCCGGTAACGACCCC
TTTTTCTATTCCTTTTTCTTCATCCCCCCTCATACCATTATTTGATCTCC
TCCTCCCTATTTTCATCCTTTTATTTCC
NTGCAAAACGACTTTAGGGGACACTATAGTTTCCTCCGCGGAATTCAAAT
TACTAATCGGTAGTAAAGACAGTGTTTCAATTTAATGTAGATGAACTTGG
CAGTCAGCGTGAAGAACAAACTTGGACTCATCTCTCAGAAGGAAGACTCC
AAAATCAAATCAAAGAGGTTTAGAAGGAAGAAGAACAGGGTGCCCACACA
GAAGAAGACACGCAGGTTAGGCCTAATGCCCTGAAATCCAAATGCTATGA
AAGAAATGTCCTGGTAAACGTGGCTACCTAATATGTTATAAGCAGCCACA
ATCACCACCTATAAAGTCAAGGGGAAAGAACTGGGGGGAAAAGGAAAGCT
ACAAAGTATCATTAAATGAGCCAAGATACAAAGAAGCGAGTTCACAAAAC
AGAACAACAAATGACCCTTAAAACTGTACCAAAGAGGTCCCACTGTATGC
ACCACATATGAGTCTGGGTAGAGTTGTGTGTGCCTGTGGCCACAGCGCTG
CAGAGAAGAGCCCAAAAGAAAGTTTAAAAGGCATGCTTCAGCCATGATCT
TGGCAAGCATCCCAAAGGCTGAGCACACAGTCATCAATGGAGCCTGACTA
TGGCAGGTCTGCTCCCAGCATCCTCTCTGAGCTGCTGCAATCCCTGGGAC
TGGTCCTCTCCAGTCAGACCCGCACGCAGACGGAACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_m12.g1 MSMg01no455_m12.g1 CHROMAT_FILE:
MSMg01no455_m12.g1 PHD_FILE: MSMg01no455_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:23 2005
         (294 letters)



>mm_chr9_115016663_115017356
          Length = 694

 Score =  569 bits (294), Expect = e-167
 Identities = 294/294 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcagccacaatcaccacctataaagtcaaggggaaagaactggggggaaaaggaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagcagccacaatcaccacctataaagtcaaggggaaagaactggggggaaaaggaaagc 435

                                                                       
Query: 61  tacaaagtatcattaaatgagccaagatacaaagaagcgagttcacaaaacagaacaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tacaaagtatcattaaatgagccaagatacaaagaagcgagttcacaaaacagaacaaca 375

                                                                       
Query: 121 aatgacccttaaaactgtaccaaagaggtcccactgtatgcaccacatatgagtctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aatgacccttaaaactgtaccaaagaggtcccactgtatgcaccacatatgagtctgggt 315

                                                                       
Query: 181 agagttgtgtgtgcctgtggccacagcgctgcagagaagagcccaaaagaaagtttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agagttgtgtgtgcctgtggccacagcgctgcagagaagagcccaaaagaaagtttaaaa 255

                                                                 
Query: 241 ggcatgcttcagccatgatcttggcaagcatcccaaaggctgagcacacagtca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggcatgcttcagccatgatcttggcaagcatcccaaaggctgagcacacagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)