BAC Information

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BAC

Clone NameMSMg01-455N12
Chromosome9 (Build37)
Map Location 122,983,514 - 122,983,681
singlet/doubletsinglet
Overlap geneZdhhc3
Upstream geneSnrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4
Downstream geneExosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455N12.T7 (MSMg01no455_n12.b1)MSMg01-455N12.TJ (MSMg01no455_n12.g1)
ACCAG542288AG542289
length714741
length of high quality
(start - end)
578 (84 - 661)169 (79 - 247)
definitionCHROMAT_FILE: MSMg01no455_n12.b1 PHD_FILE: MSMg01no455_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:28 2005CHROMAT_FILE: MSMg01no455_n12.g1 PHD_FILE: MSMg01no455_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCC
GCGGAATTCAAATGTCACCTGTCTGGNCCTGGNCCTGGACGAGAGACTCT
CTGTTACTGTGTCAAATATTGTTGGTTATAAATCTATTTAAGTTGCCTGT
GTGCTCTTGATTTAATTTTAGTTGTGCATGCCTAGGAATTTATCCATTTC
ATTCAGATTTTCCAATGTTTTGAAATATAGATTTTTTTCAAAGTACTCCC
TAATGATACTCTGTGTTTCAGTAGAATCCGTTTAATGCCCCCCTTTCATC
TCTAATTTTATTTATTATTGTATTCTTTCTTTAGTCGGTTTGGCTAAGGA
TTTTTCAATCTTGTTGATCTCTTCAAAGAACCAGCTCTTTGTTGATTGTC
TTTTGGTATTGTCTTTAAGTCTCCAAATTACTCAGTCCAGCTTTCGCCTT
CATTATTTCTTTCTTCTACTCCTTTGGTGTTTGGCTTGTTCTTGTTTTTC
TAAGGCCATGAGATGTATCACTGGGTTATTTGAGTACTTCGTGATTCTTT
AATATGTGCGTACAACTGAACTTCCCTCTTAGAACTGCCTTTGGTGTGTC
CCAAAGAATCCTTTCTTTCAAGTTTAGGCATTTGAATATCCCCTCACCGA
CTTCTTCAGTGTGTTCACGCACCATCTACTTATATAGGTTCTGATGGTTT
TCTTACCATTGAAT
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGTCCTTTATTCCACAAG
AGAGTTAATGGCGCCTTTCCCCTAGAGGGTTTCTAGCATGCCATCTTAGA
AGTACCAGTCATCGTTCCTTTGTTTTTATTTGTCCGTGGGAGGGTAGAGG
AGGGAGAAGGGAGTTGAAGGNNCAGGTTTGGGAGAACAAGCGGTTCTTTT
TTTTCTTTCCTTTTCTTTTTTAAACAGAAGCTCACTGTGCTGCCTGGGCG
GGCCNCGAGCTTTAGATGGTTTTGCACACGCTGGCCCTAACTTGCTGAGT
GTTTGTTTTCCCTCCCCCTATACGTGGGGCTTTATGAAGTCTTTGTTTTT
TGAGGTTAGGTCGCACCCCCCTCTTGGTAATCCTGATCTCTCAGTATGGC
GCTTGATGTCCGTGATCTGACTGTCTTGCCTCCAGTTTCGGAATCGCTGT
GTTTGTATCTTTGCTCTTCTTTATTTGTTTGTCGACTTTTAGTTGTTTTC
TGCCCGTGCATGTTTTTTTGCGTCCCTGTATAGTCCTAACAGTTGTGAGT
TTTTTTGTGCTGTCCTCTCCCTTCGCAGTTTCTTTGTTTAGCTTCTCTTT
TTTTTTCCCTGTCACGCGTGTTGCTTCTCTTTCTTTTGTGATATTCTATC
TTCGCATAGACTCTTCCGGTGATTAACTTTTTTTCGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_n12.g1 MSMg01no455_n12.g1 CHROMAT_FILE:
MSMg01no455_n12.g1 PHD_FILE: MSMg01no455_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:28 2005
         (169 letters)



>mm_chr9_122983314_122983882
          Length = 569

 Score =  306 bits (158), Expect = 6e-88
 Identities = 165/168 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgtcctttattccacaagagagttaatggcgcctttcccctagagggtttctagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgtcctttattccacaagagagttaatggcgcctttcccctagagggtttctagca 260

                                                                       
Query: 61  tgccatcttagaagtaccagtcatcgttcctttgtttttatttgtccgtgggagggtaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgccatcttagaagtaccagtcatcgttcctttgtttttatttgtccgtgggagcgtaga 320

                                                           
Query: 121 ggagggagaagggagttgaaggnncaggtttgggagaacaagcggttc 168
           ||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 321 ggagggagaagggagttgaagggccaggtttgggagaacaagcggttc 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)