BAC Information

Click to search

BAC

Clone NameMSMg01-456B12
Chromosome9 (Build37)
Map Location 92,466,169 - 92,466,410
singlet/doubletsinglet
Overlap genePlod2
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
Downstream geneLOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B12.T7 (MSMg01no456_b12.b1)MSMg01-456B12.TJ (MSMg01no456_b12.g1)
ACCAG542477AG542478
length718915
length of high quality
(start - end)
244 (69 - 312)39 (81 - 119)
definitionCHROMAT_FILE: MSMg01no456_b12.b1 PHD_FILE: MSMg01no456_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:47 2005CHROMAT_FILE: MSMg01no456_b12.g1 PHD_FILE: MSMg01no456_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGC
GGAATTCAGTCTACCATTCAATTACACTGTGAAGGTATGATATGTCTTTC
AGTCTTTGGACTTGTTGGAATATGTGCCTAAAATATATTAACTAGTGGTT
TATTTAAACATGTTCTATAAGCAACAGAAATGTGTATATATGTAACTTTC
CTGACTTCCTTTGGAGGGTCATGTCCACATGCATTGTAATCAAGGTTTGA
CGGTAAATATTTTCACTGACTAAAGGGGTGGCCTGCTGTGGTGTCAGTTG
AAAACATGATTGGTCTTTTTCTTTGGGGGTGCGCTATTGACAGTGTTTTT
CCTGTTTTGTTTGGTTTGGGTTCATTGGTTGGAACATTGGCAAGTGTTTT
AGATGTTTTGTCTACATGGCACGGTTCATGGATATGATCAGAGGTGACTT
GGAGCCCCTGATAGAGTCTTAAACTGCCTTATGTGATATGTGCTCCTTGG
ATCTGATTATTATTATTATTTTTTTGATAGAAAGCATATGACAGGCATAT
CTTTTCTAGAAAGAGGAGCATAGGGAAGTATCTGAGAGACTGAAAAAAAT
TAATAACAAAAAGAAGGAAAACATTGCTCCTACCTTGTTAATAAACTGCG
CCTGTTTTATCCTATAATATTAAGAACAGTATCATCTATATGACAAGGTA
TGGACTTTCCCTGCAAAC
AAAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCAGAAAATCCAGGGCCAAAAAGTGGGAGTG
GGTGGGTAGGGGAGTGGNTNTTTTTTCCCCCTTTCCTTTCTNCNCTCTCC
TTTTCTGTCCCTCTTCTTTGTTTTTTGGGGGGGGTCCTGCTTCTTCTTCC
CGTCGTCTCCGGCCTTTCGCCTTGCTCTTTTTGTCGCTTGGTGCCTTGTC
GCGGTCCCTTTTTTTTTTTTGTGTCGAGTCTGTTTCCTTGTCTTCAGGGC
TGCGCTGGCGCTCTTCAGGTGGTGCCCCGGGAGCTTTCCCATCACCTTTG
CAGACACAAAACCCATATCGACTATTTCGCCGTCTTTTATCTCCCCCCCG
TCGTTTCCGCAGCGGGGTAATGATTTTTTCTCTCTGTTAATTTTTCCCCG
CTTCCCAACCCCAATCCCAGTATTAGCTACTTGAACATACCGCCCCATTT
ATGCACTCTTATTTACAACCACACCTACCCCTACTTGTCTCTATACCTGC
CATTGTATACGGCACCGCCGCCCTCCACAATTTTCGCAATTACACGGTAT
TGCCTTTGGCGTGATTCACATTCATTGTTTATACACGACCTCCTATAAAT
ATCCCAATTCACCATTAATCCAACCTTTAGAAATAACTACGCCCCCCTCA
AACTTCCGCGTACTTATCACTCTCCCATCTCTTTACACCACTCACCCCAA
CAATAACTTTGTTTGTAATATTAAACAATACTATATATTTATTTCTACCA
TAAATACTCACTTACAACATTAGCTAATACCACAAATTTATATTACTCCA
CCACTTGTCTATTATCCGCCTATTTTATATTTTCATACAACTTAACATTC
ATTCCAATATTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b12.b1 MSMg01no456_b12.b1 CHROMAT_FILE:
MSMg01no456_b12.b1 PHD_FILE: MSMg01no456_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:47 2005
         (244 letters)



>mm_chr9_92465969_92466612
          Length = 644

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattacactgtgaaggtatgatatgtctttcagtctttggacttgttggaatatgtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattacactgtgaaggtatgatatgtctttcagtctttggacttgttggaatatgtgcc 260

                                                                       
Query: 61  taaaatatattaactagtggtttatttaaacatgttctataagcaacagaaatgtgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaatatattaactagtggtttatttaaacatgttctataagcaacagaaatgtgtata 320

                                                                       
Query: 121 tatgtaactttcctgacttcctttggagggtcatgtccacatgcattgtaatcaaggttt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tatgtaactttcctgacttcctttggagggtcatgtccacatacattgtaatcaaggttt 380

                                                                       
Query: 181 gacggtaaatattttcactgactaaaggggtggcctgctgtggtgtcagttgaaaacatg 240
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gacggtaactattttcactgactaaagggatggcctgctgtggtgtcagttgaaaacatg 440

             
Query: 241 at 242
           ||
Sbjct: 441 at 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)