BAC Information

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BAC

Clone NameMSMg01-456C13
Chromosome9 (Build37)
Map Location 47,073,243 - 47,073,465
singlet/doubletsinglet
Overlap genenone
Upstream geneApoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C13.T7 (MSMg01no456_c13.b1)MSMg01-456C13.TJ (MSMg01no456_c13.g1)
ACCAG542527AG542528
length1,103753
length of high quality
(start - end)
---228 (86 - 313)
definitionCHROMAT_FILE: MSMg01no456_c13.b1 PHD_FILE: MSMg01no456_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:53 2005CHROMAT_FILE: MSMg01no456_c13.g1 PHD_FILE: MSMg01no456_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATATCCGCCGGCGCAGAGAGAAAGNANNCGNTAATTTCAAAAAAAGGA
GGGNGAGNAAGNGGNGGTGTTTCTCCCATCAATAAACGGGGAGAATTTTC
CACGGTTTATTTTCTGTGGTGTGTAATGAGTGCAGGTGATTACTGTCACT
TAATTACTTAATCGTAGACCTAGCAATTACCCCTACGCCGATTAGGATTC
GCAGGGCCAATCAGTCGCCTGGAGAATCTGGTATATATCGTGAGTTGAGA
CTCCTCTGCTCCATATCGACCGCAGTGCTTATACCTTCATAAGATTCATT
AGAGTTCCAACCGGATACTGGCTGTTCTTCGGGATTGACGAGTACATTGT
TCGCGCCACTATGTGTCCTCATGCCTCCACAACTTCTTAATCTATTCATA
TTGCACCACTAGACCACNCGTCCCATTTTTTTTTTTTCTCCAGCGAACAC
ACCCCTTCCCCCCCAACAACTAATAATATTATGAGCGGACGCCGCCCTTT
TAGCCCCGCCTCCGCTTACATATATGTTTTCATTTCGAACACTCGTATTA
TCCGTCACAGAACAATGGACAAGTAAAAGATTGTAATCGAGATGTTTATC
GTGGTATTGTTGATGCCACCTACTCCCTCATTTTATTAGCCGCTGTATAT
AGCATTCCTGCTGAATACACTACGGTGTAACAGATAAATCTATATCTAAA
GCACACACGTAGCGCCATCACCATATGTGCGCGACCGTACCAGTGTTGTC
CTGGTGAGCTGACAACTATACTCAACGTATTGAACCAAATATTTAAACGA
GGGTCCCATATCGCACGGACGTTACCCCACTTCAGGNGACACACTATTAT
ACAATTGTTCATGTTTGCTGATATTCGCAGTGCCCATATATAGATGGAGA
TACCTAATAACGGTATGCGGGACCACCAGTTCTGTTCTCTCTATTTATGA
TTTAATCGCATCATACGTGTGCTCCGTCATAGTCTCCGCCATCTATCACA
CCATACCGCATATGACGCACTTGCTAATACTATTGTAGCGAAAGCGACAA
CAGATTGACCACTGAGCGACTATATATAATCTATATCACAATACCTCTCA
TAN
CTTCATCATGATGTGGGAGCCTGGGGGGGNCTGGTTTTCAAACCGCGNGA
ANNANAGAAGTTTACAAGAATTGCGACCCTTNCCNAGACTGGGACCTTTC
CTTCCTCCATCTCTTTGCCCGAGACTCTTCTTTAGAATGGGAATGATGAG
AGTAGGAGCTAGAGCAGCCTCTCCATTTAACTGGGAGCTTCTCTTGAGAC
CATCTAGGCATCAAGAAGAATAAAGATGGCTTCTAGAGATTGTCCTTTTT
TTGTGAAGCCAGTAAGGAGACACAACGTGGGCGTATCTGTAACAGAGGCA
ACAGAAGGGCATTTTTTTTTTTCACCANGCGAGACAACTCCCCTAAGCCC
ACTGGTCTCTCCCCCTTACTCAAAGCAGGTGAAACCGTCAGGAGACTACA
CATGAAGGACTGACCCCCACCTGAGGCGGTGTCCTTGTCATGCTGTATCA
GTGTCTAGTTTCAGACCTGTATGACTGTTAAGGATTGATAATTTCTCTCT
CTATTGGTCTCCTTTTGTCGCTGCTGTCACCTGTCCGTCATTTTTCTCTC
CCTGACGCCGTCTACTTATCTCCGTCGCTTTATCCCTGTTTTTTTTTTCT
TTTTAATTTTTTCATACTTTGTTCTAGGTTCTTTCGTTGTAACGAAGTAC
CCCATCTTTTTTTTTTTTTTCTACGCCTTCTCCTATCCCCACATCTCTCC
TTTACCTCACGTCTTTATCGCGTTACTCGTCAGTCTACTCCGTTCCTCTT
TCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c13.g1 MSMg01no456_c13.g1 CHROMAT_FILE:
MSMg01no456_c13.g1 PHD_FILE: MSMg01no456_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:53 2005
         (228 letters)



>mm_chr9_47073036_47073667
          Length = 632

 Score =  329 bits (170), Expect = 1e-94
 Identities = 208/232 (89%), Gaps = 22/232 (9%)
 Strand = Plus / Minus

                                                                       
Query: 8   gacctttccttcctccatctctttgccc------gagactcttctttagaa---tgggaa 58
           ||||||| ||||||||||||     |||      |||||||||||||||||   ||||||
Sbjct: 430 gaccttttcttcctccatct-----cccatggatgagactcttctttagaagtctgggaa 376

                                                                       
Query: 59  tgatgagagtaggagctagagcagcctctccatttaactgggagcttctcttgagaccat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgatgagagtaggagctagagcagcctctccatttaactgggagcttctcttgagaccat 316

                                                                       
Query: 119 ctaggcatcaagaagaataaagatggcttctagagattgtcctttttt----tgtgaagc 174
           ||||||||||||||||||||||||||||||||||||||||||    ||    || |||||
Sbjct: 315 ctaggcatcaagaagaataaagatggcttctagagattgtcc----ttaaggtgggaagc 260

                                                               
Query: 175 cagtaaggagacacaacgtgggcgtatctgtaacagaggcaacagaagggca 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagtaaggagacacaacgtgggcgtatctgtaacagaggcaacagaagggca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 632
Length adjustment: 9
Effective length of query: 219
Effective length of database: 623
Effective search space:   136437
Effective search space used:   136437
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)