BAC Information

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BAC

Clone NameMSMg01-457A11
Chromosome9 (Build37)
Map Location 91,401,904 - 91,402,159
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457A11.T7 (MSMg01no457_a11.b1)MSMg01-457A11.TJ (MSMg01no457_a11.g1)
ACCAG543192AG543193
length751745
length of high quality
(start - end)
302 (329 - 630)264 (333 - 596)
definitionCHROMAT_FILE: MSMg01no457_a11.b1 PHD_FILE: MSMg01no457_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:04 2005CHROMAT_FILE: MSMg01no457_a11.g1 PHD_FILE: MSMg01no457_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCCGCGGA
ATTCTTTTAGAATGTCCTATAATAAAAACAGCACTAACAAAGAAAGCAAT
GTAAAAGAATGTATTAAAGATGAGTCTTACATATACTTCTGTTCTCTCAT
TTTTAAAATTTTTGTCAGGAATGTGGTAGTTTGTCTCATGTCATTGTTAA
AACTTCTTGCCTAAAACCATTTTCATTATGTTATATATATGAATTCCAAA
GCACTGCACAGAAGATCATGTGCATCTCCAGCTATGCCCACTTTAGCATC
ACCTCCATAAAGTGGATAATACTTTATATTTGCCATTCAAATGCACATTT
GTGATACAAAATAAAATTATATCGATGGAATTATGCTCTAGGGAGCATTG
TATTAGTGACTTCTCTCGTTTCTGTGATCTGGCAAAAACAACTTACGGGA
GAAGGATTTAGTTTGCCTGATAGTTTAAGAATGGATGATGTCCATGATGG
AGTAGAAGTCATGACAGCAGGAGCTGGACAAACCTTGTCTCTTGTGTCTG
CATTCAGAAAGGAGAGAGTGGGGGTCCAGACTATCAAACCTGATATCCCA
TCACAAGTGAATCACTTCTAAGAGTTTGGAACTACTATAGGTTTCCCAGC
TTTTATTACCAGCTGTGCTAGTTGGGGGCTAATTGTATAGAGCACACTAC
CATATGAGGGGCATGGCATATTCAAACGGCAGGCATGAAGGTCAGCTCTT
T
TTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCAAAAATTCTTTATAATGCTTACATGGGACGAG
ACTGCATTAGGTTGTGGTATTCTTTCTCTTTGTATAGAGTATAGCTAAGT
AGCCAAACCTTGTGCTCATGTGCTTAGGGTACTGTGAATGATGTACAGTA
CCACTCTGATAGTGTTTTGTTAGTGCAGAAGCAACATCAACTTATGGATA
AGCCTATCTTGAAAATGTAGTGATAACCATTAAAAACAATTGCCTCTTCA
TCTCTAAAACCTTCTAGAGAATTTAGTGATTAAGTGTGGCATATATATAT
ATATATATATATATTCTGGGATACTAGCTACTAAAGTGGGTACAGATTGA
GAATGAATTCAGTATGACTGGGAATTTATATACGAGCATCAGAGACAGAA
GAGAAGGGAAAAGGAAACAGAGTGTGGGTATTGGGATATTGTTATGAGCA
CACCTCAAGATTAACGAAGAGACAGAAAATTATCATTATGAAGATATAGA
GGGCTTAAGAGGATAGAGGAAAGAGAAATGAGGTAGAAATGAGAGGAGAA
AATTATAGGTTATTGGTAATTGAAATAGTAGAGAATACATAGCAGATTAT
TCATAGAAATTTATTTTTTTTTCTTTTGTTATCTAGCTCTAAACACCTTA
TTAACTTAAGCATTTTACATAGGGGCGTAATATTTAGTATAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_a11.g1 MSMg01no457_a11.g1 CHROMAT_FILE:
MSMg01no457_a11.g1 PHD_FILE: MSMg01no457_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:04 2005
         (264 letters)



>mm_chr9_91401696_91402359
          Length = 664

 Score =  487 bits (252), Expect = e-142
 Identities = 255/256 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   atatatatatatatatatatatattctgggatactagctactaaagtgggtacagattga 68
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 209 atatatatatatatatatatatatactgggatactagctactaaagtgggtacagattga 268

                                                                       
Query: 69  gaatgaattcagtatgactgggaatttatatacgagcatcagagacagaagagaagggaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaatgaattcagtatgactgggaatttatatacgagcatcagagacagaagagaagggaa 328

                                                                       
Query: 129 aaggaaacagagtgtgggtattgggatattgttatgagcacacctcaagattaacgaaga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaggaaacagagtgtgggtattgggatattgttatgagcacacctcaagattaacgaaga 388

                                                                       
Query: 189 gacagaaaattatcattatgaagatatagagggcttaagaggatagaggaaagagaaatg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gacagaaaattatcattatgaagatatagagggcttaagaggatagaggaaagagaaatg 448

                           
Query: 249 aggtagaaatgagagg 264
           ||||||||||||||||
Sbjct: 449 aggtagaaatgagagg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)