BAC Information

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BAC

Clone NameMSMg01-457E07
Chromosome9 (Build37)
Map Location 22,605,099 - 22,605,618
singlet/doubletsinglet
Overlap geneBbs9
Upstream geneDock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper, LOC100040866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457E07.T7 (MSMg01no457_e07.b1)MSMg01-457E07.TJ (MSMg01no457_e07.g1)
ACCAG543375AG543376
length738750
length of high quality
(start - end)
519 (77 - 595)451 (79 - 529)
definitionCHROMAT_FILE: MSMg01no457_e07.b1 PHD_FILE: MSMg01no457_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:25 2005CHROMAT_FILE: MSMg01no457_e07.g1 PHD_FILE: MSMg01no457_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAAAATTTTCTACTGTATGTTGTAGTCAACTCTGGTAATACAG
AATATTACATAATTAAACAATAGCAGTTGCATCTTATATGGCCATTATGA
ATAAGAAACTAATTCCACATGTTTATCTTGCTGGCTAGGACCATGGGAAA
TACCAAAATATTTACTTTCTGGCCCACATTCCCATAGACAGTTATAATTG
TGATGATACTTGAGCTGTCACAAAGGCAGACTTAATAGTGACACCAGACT
TCCTCCTGTTTCTCTTTTTATTGTTTCATTAGTAATGGTGGTGATTAGTC
ATCGCTCGGTCCAGACAGCAGGCACAATGGTTCTGACTTCAAATCTGACC
TGCGGCCTAGTCACCTTTCAGCCTTAGAAGTGAGCCTCGATAAGTCCCTC
CGTACAATAGGACTTCCTATTATAAACATCTGCTTTCTCACATGAACCAT
GTTCAACATGTTAAAAATAAGTTTCCTTTCCGTATCCGTTTGTAAAAGGA
ACCATCAATCAATTAGACTGAAGGTTCAAGTCTCCCTCTTCCGTTGATGT
GAATTTCCATCCAACTTTCTCAGGGAGTTTTAAAAGTAAGTACCACGGGA
TTTTTTTTTATTAAGTCCTTGAAAATACCATAAAACATTTCTTTTTCAAA
TGTAAGACAATACTGCCAAAGAAATTGAATGCTTTTTC
NNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCATTGACTGAGCAGCAGT
GCTCAGGAGAAGGGTCTAGGGAGGAAGGGTCCGGAATAAGCATCTTATAA
GACTCTTGACAGTACATGAGACCTCTTTCATAAGAATGAGTTCTATTGCC
TGAAACACAGTGCGTAGGAGTCCGGGATAAACATAATAGTTTGGGGGATT
TGAGTGAATCCTGGCTCTACAGATTGCAAAAGATCACCAGGTTATTAACT
ACATCTAATTCCAACTTTCTAGGTCTTTTTTAGGTATAAATCTCTTCCAC
TGAATAAAACAGCATGAGGGTTTAACATTCCTAGTTTCTCTAGTGTTATC
TGTGAACATAAAGACCTTGTGCTCTTTACAGTTGTCCTTTGTTTTCTTAC
TGATAGTCTCTGACAGGGCTGAGGCAGTGTGAACGTTTTAATCATTAGCT
TATGGAATCCAGAGTCACCTGGGAGAACAGCCTGTGAGGTATTGTTTTAA
TTGCATTAATTGATGCTGAAAGACTTGGCCACTATGGGCGGCCCCATTCC
CTGGCTTTGGGTTCCTGAACTGTGTAATAGTGGAGATACTTTGTTTGATC
CTATCCTGTTTGTTTTTTTTCTCTGGTTTTGTGTCCCCTTGAATGAGTTT
TATTTAATACAACCTTTTGTTTCATTTTTCCTTGTTCGCCCTTCTTTCAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_e07.b1 MSMg01no457_e07.b1 CHROMAT_FILE:
MSMg01no457_e07.b1 PHD_FILE: MSMg01no457_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:25 2005
         (519 letters)



>mm_chr9_22604899_22605818
          Length = 920

 Score =  936 bits (484), Expect = 0.0
 Identities = 511/522 (97%), Gaps = 5/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtagtcaactctggtaatacagaatattacataattaaacaatagcagttgcatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttgtagtcaactctggtaatacagaatattacataattaaacaatagcagttgcatctta 661

                                                                       
Query: 61  tatggccattatgaataagaaactaattccacatgtttatcttgctggctaggaccatgg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tattgccattatgaataagaaactaattccacatgtttatcttgctggctaggaccatgg 601

                                                                       
Query: 121 gaaataccaaaatatttactttctggcccacattcccatagacagttataattgtgatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaaataccaaaatatttactttctggcccacattcccatagacagttataattgtgatga 541

                                                                       
Query: 181 tacttgagctgtcacaaaggcagacttaatagtgacaccagacttcctcctgtttctctt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tacttgagccgtcacaaaggcagacttaatagtgacaccagacttcctcctgtttctctt 481

                                                                       
Query: 241 tt---tattgtttcattagtaatggtggtgattagtcatcgctcggtccagacagcaggc 297
           ||    |  |  |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 480 ttgagca--ggctcattagtaatggtggtgattagtcatcgctcagtccagacagcaggc 423

                                                                       
Query: 298 acaatggttctgacttcaaatctgacctgcggcctagtcacctttcagccttagaagtga 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acaatggttctgacttcaaatctgacctgcggcctagtcacctttcagccttagaagtga 363

                                                                       
Query: 358 gcctcgataagtccctccgtacaataggacttcctattataaacatctgctttctcacat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcctcgataagtccctccgtacaataggacttcctattataaacatctgctttctcacat 303

                                                                       
Query: 418 gaaccatgttcaacatgttaaaaataagtttcctttccgtatccgtttgtaaaaggaacc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaaccatgttcaacatgttaaaaataagtttcctttccgtatccgtttgtaaaaggaacc 243

                                                     
Query: 478 atcaatcaattagactgaaggttcaagtctccctcttccgtt 519
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atcaatcaattagactgaaggttcaagtctccctcttccgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space:   463190
Effective search space used:   463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)