Query= MSMg01no457_i04.b1 MSMg01no457_i04.b1 CHROMAT_FILE:
MSMg01no457_i04.b1 PHD_FILE: MSMg01no457_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:44 2005
(311 letters)
>mm_chr9_121474878_121475587
Length = 710
Score = 586 bits (303), Expect = e-172
Identities = 309/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 1 tgtgctcgcccacctgagagagacagggacaagagaaaggggagagagaattcacatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtgctcgcccacctgagagagacagggacaagagaaaggggagagagaattcacatggc 379
Query: 61 aggggttgtgtgctcattctttgaataggatttttttttcttgatttcttttcagataat 120
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 378 aggggttgtgtgctcattctttgaatggga-ttttttttcttgatttcttttcagataat 320
Query: 121 tcacctcatttaaaaggaaagagtttatcttttcagctccactgggatatcagccatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcacctcatttaaaaggaaagagtttatcttttcagctccactgggatatcagccatggg 260
Query: 181 cttgttacctggagcctttatggggtgaaggacatttcagagattttctttaaattattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttgttacctggagcctttatggggtgaaggacatttcagagattttctttaaattattt 200
Query: 241 ttattttattttacatgttagggtgttttggttgcatgcatgtagtgcttgaggaagcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttattttattttacatgttagggtgttttggttgcatgcatgtagtgcttgaggaagcca 140
Query: 301 gaagagggcgt 311
|||||||||||
Sbjct: 139 gaagagggcgt 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space: 211702
Effective search space used: 211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_i04.g1 MSMg01no457_i04.g1 CHROMAT_FILE:
MSMg01no457_i04.g1 PHD_FILE: MSMg01no457_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:44 2005
(370 letters)
>mm_chr9_121331256_121332025
Length = 770
Score = 708 bits (366), Expect = 0.0
Identities = 369/370 (99%)
Strand = Plus / Plus
Query: 1 tttgaggggtccatctgttagcttaaaagatagtggtctctggcagttcatggggaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaggggtccatctgttagcttaaaagatagtggtctctggcagttcatggggaaaac 260
Query: 61 aggtcagtccccccaccacccgtaatagctctaaagacactggggtgggctcttctccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcagtccccccaccacccgtaatagctctaaagacactggggtgggctcttctccta 320
Query: 121 gggtggatatcagctatgaaggcgagggtatgcatacacacttggccaagggccagggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtggatatcagctatgaaggcgagggtatgcatacacacttggccaagggccagggca 380
Query: 181 atggtgcattcccaggaatgagcaacttgattcattcctcactaaaagccttggggataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtgcattcccaggaatgagcaacttgattcattcctcactaaaagccttggggataa 440
Query: 241 gtggccaccatatgtcaacacctagagttccagtctggggtgaggtctgcgattactgtg 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggccaccataggtcaacacctagagttccagtctggggtgaggtctgcgattactgtg 500
Query: 301 ttaagtccgtagttacacctcacctgtccttgaaacttggcctcgctctctgtttgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagtccgtagttacacctcacctgtccttgaaacttggcctcgctctctgtttgattt 560
Query: 361 gttatatggg 370
||||||||||
Sbjct: 561 gttatatggg 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
