BAC Information

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BAC

Clone NameMSMg01-457P03
Chromosome9 (Build37)
Map Location 36,806,117 - 36,806,492
singlet/doubletsinglet
Overlap genePknox2
Upstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1
Downstream geneLOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P03.T7 (MSMg01no457_p03.b1)MSMg01-457P03.TJ (MSMg01no457_p03.g1)
ACCAG543891AG543892
length766803
length of high quality
(start - end)
82 (234 - 315)427 (82 - 508)
definitionCHROMAT_FILE: MSMg01no457_p03.b1 PHD_FILE: MSMg01no457_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:22 2005CHROMAT_FILE: MSMg01no457_p03.g1 PHD_FILE: MSMg01no457_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTTTGTTTATTACTGTCGCTATACTACTACTATTTTTAGAGTATTCGC
GGATTTCTCTGTATTTTATAAGTAGGCAGAGATGCACTGAACACCTCATT
CATAGGTCTATTTCTGTTTATTACAGCATCATACACTGCCCTGGGTGCTG
GAATTAAAGAACACTGAGTCCTACTCTCACAGAAATGATCTTTCTGGCCT
CAGTAAAGGAATCTATAGTCACCATACTAAACCAGCCCACTCTGCCACAG
AGAGACCCTTGCATTTGCTTCCCACCCAGTCTCCATGTCTGAGCCTGGAC
TGGAAGTTACTGTCGTGAGTGAGGTCCACAGCGCATGTCCCATTTCCATG
TCTTCTGTCATTTGACTTTCCATCTATCTGGATCCATCTCTTGCCATTAC
AATAGTGTTTGTTCTCTCCTTATCCTTTTCCTATGCTTAAGCTTCTCTAT
TTCTTCCTAGTACCAAGCCCACCCTGTTCTTCAGTCCCTCTCTCCCTGAA
CTTAATTTTCTTCTACTTCCTATGGTTCTCTTATCCCTTCTCTCACGTCT
AATTATTTCTTCTTTTCAACTCCTGTTCTCGTGTGTAGTCTCCCCATATT
TTGCTGTTCTCCTCATTAACGGTTTTGTCTCTATATACCCCTCCCTCTAT
TTTTCGTTATCTCTTCTTGTCTTCCTCTCGACTGTTTTATCCTTATGTCC
TCCCGTTCTTCTTTTTTTTCCATCCTCGCTTTTCTTCTCATTTTCTTCCT
CTTCCCTACCTCTCTA
NNNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAAAAAACAAAACAAAA
CAAAACAAAACCAAAAACTCCTGCACCTCTTTAAAGCCATGCATGTTGTT
ATAGTGACCACATCATTCATCTGTCAGACTGGAATAATTTTCAGAATGAG
AGAGAGCATGATTATAATTGCACAGGTTTCCATTGAGAACATTCCTGACA
AAGCAGGTCACATGGGCCCATCTCTTAGTGCCTGTTTCTTTCTGCCTTCG
AAGGAAGAAATGGGTTACCTCGCCTAGCTACCTGCAAGCAGCAGCAAGCT
TAAGGATAAGGAAAATGGTTGGTCTCTTTTCTTTTTTCTCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTCTTTTC
TTTTCTTTTCTTTCCCTTTCTTTTCTGTTCAGGAATGGCTCTCCCTTTGT
AATCCTATTCTTGTTTTCAATTCTGTAATTTTTCTTGACATAACCTTTTT
TTGTTACTGGCTCTTCATTTTTTTTTTTTCACCTGCCCTTTTTTTTATTT
CTCTTTATCTTTTTGTATTCTTTTATCTAATTGTTTTCCTTCTTCTTTAT
TCTACCCTAATTTTTATTTCAGGCCTATGTGTTTTTTTCGTCCTTCTTTT
TCTTTAAACTTCTTATTTTTTAATTTCCTTTTCTCTATATTCTATCTCTC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p03.g1 MSMg01no457_p03.g1 CHROMAT_FILE:
MSMg01no457_p03.g1 PHD_FILE: MSMg01no457_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:22 2005
         (427 letters)



>mm_chr9_36805903_36806729
          Length = 827

 Score =  605 bits (313), Expect = e-177
 Identities = 363/383 (94%), Gaps = 8/383 (2%)
 Strand = Plus / Plus

                                                                       
Query: 16  aaaacaaaac-aaaaccaaaaactcctgcacctctttaaagccatgcatgttgttatagt 74
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aaaacaaaaccaaaaccaaaaactcctgcacctctttaaagccatgcatgttgttatagt 274

                                                                       
Query: 75  gaccacatcattcatctgtcagactggaataattttcagaatgagagagagcatgattat 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaccacatcattcatctgtcagactggaataattttcagaatgagagagagcatgattat 334

                                                                       
Query: 135 aattgcacaggtttccattgagaacattcctgacaaagcaggtcacatgggcccatctct 194
           ||||||||||||||||||||||||||||   ||    |||||||||||||||||||||||
Sbjct: 335 aattgcacaggtttccattgagaacatt---ga----gcaggtcacatgggcccatctct 387

                                                                       
Query: 195 tagtgcctgtttctttctgccttcgaaggaagaaatgggttacctcgcctagctacctgc 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagtgcctgtttctttctgccttcgaaggaagaaatgggttacctcgcctagctacctgc 447

                                                                       
Query: 255 aagcagcagcaagcttaaggataaggaaaatggttggtctcttttcttttttctctttcc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagcagcagcaagcttaaggataaggaaaatggttggtctcttttcttttttctctttcc 507

                                                                       
Query: 315 tttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcctttcc 374
           ||||||||||||||||||||||| |||| |||| |||| |||| |||| |||| |||| |
Sbjct: 508 tttcctttcctttcctttccttttcttttcttttcttttcttttcttttcttttcttttc 567

                                  
Query: 375 tttcctttcctttcctttccttt 397
           ||| |||| |||| |||| ||||
Sbjct: 568 ttttcttttcttttcttttcttt 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)