BAC Information

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BAC

Clone NameMSMg01-459F16
Chromosome9 (Build37)
Map Location 79,118,657 - 79,118,776
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F16.T7 (MSMg01no459_f16.b1)MSMg01-459F16.TJ (MSMg01no459_f16.g1)
ACCAG544969AG544970
length826766
length of high quality
(start - end)
124 (40 - 163)375 (68 - 442)
definitionCHROMAT_FILE: MSMg01no459_f16.b1 PHD_FILE: MSMg01no459_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:15 2005CHROMAT_FILE: MSMg01no459_f16.g1 PHD_FILE: MSMg01no459_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGTTATACCTTCTTTCCTTTTGGCAATTTCTGTTATACTATGAGCCTTTC
TTTTGCTGAATTAAGCTTAGGTTATGGGATAAAAAAGTTTCTATTATGGC
TATTACAGAGTTTAAAGATGTGNNNGTGGTTGTTGGNCCTATTNCAGCTG
GAAGCGGGGTTGGGGGCGGGTAGGGTGAGGGGTTGTGTGGGACGGGATGT
GGCGGAGGGGTGCTTCGCNTATATTNCCCTGGTCCCCGGNCCTAACAAAA
TTTTGCCCGCCTTTTTTCTAAGGTTAACCGGGAAATGGAAGGGCTCATCT
TTTACCCTGGCAAAAAATCCTTCCCTTTTTCTTTACCCAATTTTCCAAAA
AAAAAACCCCCTTAACCCCATAAAAGGGTGAGACTTTTCTTTGGCTTTTT
AGCCCAAAAAAAAAAAAACACAGGGGGTTTTTCCCCAGAAAAAAGGGGCT
CTTTTAAAAAAAAAAAANTTGGGGTCCGGCGCCCCTCTTTTTTTTTGAAA
ACAAATTTTTTGTAAAAAAAAAACCTCCTTGTGAACCCCTCCTTCTTGAA
AAAAAAAAAAAAAACAAAAANCTCCCTCCCAACAAATACCCCTCCTTTTA
TTTAATAAAAGTGTCTTACCCACCCCGCCCCCCCCCACAAAAATATTTTT
TTTTTTTTTAACTATCCCCCCCTCCTTCCCTCCCTCCTTCCCCCCCCCGG
CTCTTTTTTTTTTTCCTTTTTCCCCCATTTAACAAATCTATATTTCAACC
CTTACTTTTCTTTTTTTGTTGTTGGT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTACTTTTTTGGCTAGTATTCACTTATCAGTG
AGTACATAACATGCATGTGCTTTTGGATCTGGGTTATCTCACTCATGATG
ATATTTTCTAGTTCCATCTATTTGCCTGCAAAACTCAGGATTTCCTCATT
CTTATAGAATTCCATTGTGTAAATGAACCACATTTTCTGTATCCATTTTT
TTTGTTGTGGGACTTATGGGTTGCTTCCAGCTTCTGGCTGTCACAAATAA
GGTCACTACATACTGAGTGGAACACATGACACTCTGGTATGATGGGAGAT
CTTTTTGGTATAAACCCAAGAGTTGCTATAGCTGGATCTTCAGGTAGACC
TAGTTCCAATTTTTTGAGGAACCTCCAGATTGATTTCCAGAGTGGTTGTA
CCAGTTTGCAAGCCCACCAGCAATGGAAGAGTGTTCCTCATTTTCTACAT
CTTCACCGACATGTGTGGTCACCCCCGTTTTTTATCTTAATTATTTGTGA
AACGGGGAACCTCCATGGTGTTTTGATTTTCCCTTCCCCGGAAATAAAGA
CTTTGACATTTCCCCTATGCGTCTCCCCCCTTTAAATTATCGTGTGGGAT
ACCCGCCCTGATTAACCCCTCTTTCCCTTGGGCTTTGAGTTTCCTCGAAT
TTCTCTTGCTTCTCTTCTTCTCTTTTCCCCCCTTCTTTCTTTTCTTTTTC
TTCTCCTCCCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f16.b1 MSMg01no459_f16.b1 CHROMAT_FILE:
MSMg01no459_f16.b1 PHD_FILE: MSMg01no459_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:15 2005
         (124 letters)



>mm_chr9_79118453_79118976
          Length = 524

 Score =  201 bits (104), Expect = 1e-56
 Identities = 116/120 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggttataccttctttccttttggcaatttctgttatactatgagcctttcttt 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattcaggttagaatttctttccttttggcaatttctgttatactatgagcctttcttt 265

                                                                       
Query: 65  tgctgaattaagcttaggttatgggataaaaaagtttctattatggctattacagagttt 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctgaattaatcttaggttatgggataaaaaagtttctattatggctattacagagttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)