BAC Information

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BAC

Clone NameMSMg01-459G06
Chromosome9 (Build37)
Map Location 62,800,451 - 62,800,871
singlet/doubletsinglet
Overlap genePias1
Upstream genePaqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4
Downstream geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459G06.T7 (MSMg01no459_g06.b1)MSMg01-459G06.TJ (MSMg01no459_g06.g1)
ACCAG544996AG544997
length777833
length of high quality
(start - end)
426 (42 - 467)59 (132 - 190)
definitionCHROMAT_FILE: MSMg01no459_g06.b1 PHD_FILE: MSMg01no459_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:18 2005CHROMAT_FILE: MSMg01no459_g06.g1 PHD_FILE: MSMg01no459_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCGCGGAA
TTCAAGGATTTCCGCTCTCTTCCTGTGGCTTACCTCTTAGTCTTTCCTTC
TATACAGCAAGCTGGCAGTCTCATCAGATGCTAAAGCTTGCACTTCTCAT
TTAAGCCATCAGGAATTCCATCTGCACAACCATACTAGGTGAAGCCACAC
AACAGAAATCTACTTACCTTCATTAATCCTGTGTTCACAATTTATTTCAT
CTACTTCCCCCCACCTTCTAAGAACATGGAGATCTAATCTGAACCTCCCA
TTTTAAAGCAACAGAAAGGGGAACCAAAAACCACACTGTTACTTATGGAA
GTCCTGTCTCTGACAGGAAATGCCAGGATGGACACACACCTGCAAGCTTA
AATTCATTAAATCCTCTATTCCTTAACTGTTGGATTGTCTGCCCTCATAT
TAAATAACACCACACAGTGGCTGCACTGTCTCCCTACCTTTCCATACCAC
TCATTATAAATACCCTTCTTTCTCGGCTAACACTATTAAACTAGTGCTTC
TCACTGTGTTGTGAACCCTTTCAGAGTCTCCTTATGTTGGAATGGACCTA
CTATATACCTTAACCAAAAAACTCACTTTGTCTATTCCCTAAATGGGTTC
TTCGCCCTCCGCCCTACAATGTTTTTAAAACAATCCGGGGTTTTCACAAC
GTCGCTCTCATTTATATCTTGCGATAGTACTCATCTCCATCCTCTTATCT
CCCTTCCCCAAGTAGTCTTCCAATACC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCACGCGGAATTCTCGCGTTTTCCCTCCAAACTCCCCC
AAAGTGGAAAAAAGTATACAGGCGACCTTGGGGCTGGCCAGAAGGAGAGC
CTCAGATGGTAGGGAGCCTCTGAGGGTTGGAGGTGTTGTTGTATTCCACC
TATAACGTTCTCTCTCGCTCACTATATAACTCTCTACTTCACCCTGAACC
CCTCTTGGGTTCTGTATCTCTTACAAATGTCTTGCTCCCCCCCTTTTTTG
TTCTTACCCCTCTCCTTGCTTTTTTTTTTTAATTCCCTCTACTCTCCCTT
TCTCCCCCCATTTTGTCTCCCTCTTCTTTTTCTTTTTCCTCCTCTCCTAT
TACATCCCTCCTTTTTCGTTACTCTCTCCCCCTCTCTTATGTTTATTTCT
TTCCTACTTTCCCCTTCTTCTTTCTCTCCTCTTATTTGTTCCCCTTGTTC
TCATCTCTCCCCCCTCTTTTCTCTTTTCCTCTCCTCATTTTCCCCTTCGT
CCCTCTTTCTCTCTCCCTCCTTTCTCTCACTCTCTTTCCTCCTCCCTTCT
CTTTTCCTCCCCTTTTTTTTCTCTCTTCTTTCCTACCCTTCCCCCCCCCC
TTGCTTTCTTTCCTCTCCCCCCCCCTTCCTTTTTCTCTCTCTTTCCCCCT
CTCCTCTTCTCACTCCCTTTTTATCCTTCCTCCCTTTCTCCTCCCTCTTT
CGATCTCTTCTTCTTTTTTTTTCCTTTTCTTTCCTTCCCCTGCCTCTTTT
TCTTTGTCCTCCCCCTCTTCTTTTCTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_g06.b1 MSMg01no459_g06.b1 CHROMAT_FILE:
MSMg01no459_g06.b1 PHD_FILE: MSMg01no459_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:18 2005
         (426 letters)



>mm_chr9_62800246_62801071
          Length = 826

 Score =  774 bits (400), Expect = 0.0
 Identities = 416/424 (98%), Gaps = 6/424 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcaagga---tttccgctctcttcctgtggcttacctcttagtctttccttctat 62
           ||||||||||||   ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaaggacagtt---gctctcttcctgtggcttacctcttagtctttccttctat 262

                                                                       
Query: 63  acagcaagctggcagtctcatcagatgctaaagcttgcacttctcatttaagccatcagg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acagcaagctggcagtctcatcagatgctaaagcttgcacttctcatttaagccatcagg 322

                                                                       
Query: 123 aattccatctgcacaaccatactaggtgaagccacacaacagaaatctacttaccttcat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattccatctgcacaaccatactaggtgaagccacacaacagaaatctacttaccttcat 382

                                                                       
Query: 183 taatcctgtgttcacaatttatttcatctacttccccccaccttctaagaacatggagat 242
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taattctgtgttcacaatttatttcatctacttccccccaccttctaagaacatggagat 442

                                                                       
Query: 243 ctaatctgaacctcccattttaaagcaacagaaaggggaaccaaaaaccacactgttact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaatctgaacctcccattttaaagcaacagaaaggggaaccaaaaaccacactgttact 502

                                                                       
Query: 303 tatggaagtcctgtctctgacaggaaatgccaggatggacacacacctgcaagcttaaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatggaagtcctgtctctgacaggaaatgccaggatggacacacacctgcaagcttaaat 562

                                                                       
Query: 363 tcattaaatcctctattccttaactgttggattgtctgccctcatattaaataacaccac 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 tcattaaatcctctattccttaactgttggattgtctgccctcatatcaaataacaccac 622

               
Query: 423 acag 426
           ||||
Sbjct: 623 acag 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)