BAC Information

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BAC

Clone NameMSMg01-459H16
Chromosome9 (Build37)
Map Location 94,703,170 - 94,703,593
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459H16.T7 (MSMg01no459_h16.b1)MSMg01-459H16.TJ (MSMg01no459_h16.g1)
ACCAG545062AG545063
length790846
length of high quality
(start - end)		424 (61 - 484)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no459_h16.b1 PHD_FILE: MSMg01no459_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:25 2005CHROMAT_FILE: MSMg01no459_h16.g1 PHD_FILE: MSMg01no459_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTGCTTTCTGTTTCCCTTTGAGAAACACCTTTTCCTATGTATTTGTCTG
TGTGCTGTAGAGGTTTCAGCCTTACCCTTTGTTTTTACCAGAGTATATTT
TCCTTTCTAAGGCCCCACCAGAGAATTCACGAATCTAGTAGTCCTATGTT
GCATAGGATTGGGTCACTTAGCCAATTTCATTCACTTTGTCACCCAGGAA
TTCATAATTTGGAAACTAAATTTCTTCGTTCAACAAATAATTATCAGTAG
ATTATGCCTGCTCTCTAGGAGACTACACTTTAGGTGTAACAGTTCATTAA
CTCATTTCATTCACATTGTGGCTAAGAGCTCTACAGAGAAATAAAGATGG
CCCACAGGCCCAACTCTGAGTCCTGGAGAAAGCTGAGGGATCTCTAGCTT
ACACAGTTCAGTTTTTAAAATGTTGGGTCTGGGATAGTGAGACAGACTGC
TGGGTGTCTGATATAGATCAGTGAGAAGATTGCTTAAGACTCCGATGTTT
GAGCACATATTTAGGGGCATTAGTATAACCTTGGCTATGATAAAATTTTA
GAAAGACCCCCTTTAAAAAAAGGCTATGTCCAAGGGTGGGTTTTTTGGTG
GGAGTTTATGGGGTGGAAAAAAATAAAAGTCCGCTATTTTCCTCCATAAA
TTTTTGTCCCCCCATACCTAGTGAAGGTTTTATTTTTCCCAAGTACTACA
ACGTCCTAAGAACCCTTCATTTGCCCTTTTTATGGTACTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAGCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATGGAGGATTTT
TGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTG
GATCTTTCTGCGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTATCCTCTATTTCTATCTTGCGTTAAATTTTTGTGTAGAC
CTGTAATTATACTTTCTTTTTAAGTCCTGTTACAACTTTGTCTTTTCTCC
CTCCCCGCTCCTTTTTCCTTCTTTCCTTTGCTTACCCTCTTCTTCTTTCC
TCCCCTCCTTTCCCCCCCCCCCTCATCCTCTTTTCTCTTTTTAGCTTATC
TCGTACTCCCCTATTTTTCCCCCCTTCTTCCTTTACCCCCCCCTCTTCCT
CTTCCCCCTTTTTTTATAATGTTATTGCCTTTTCCTCCCCCCCCACCTTT
TCTTCTCCTCTCTTTCCCACTTTCCCCTTTTTCTCTTCTCCCTCTCTTTC
TCTCCCCTCTACCTCCCCTGCTTCCTTCCTTCTTCTCTCCCCCCACTTTC
CCTTCGCTTTATTTTATTTCCCCTCCGCCCTTCCCCCCTCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_h16.b1 MSMg01no459_h16.b1 CHROMAT_FILE:
MSMg01no459_h16.b1 PHD_FILE: MSMg01no459_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:25 2005
         (424 letters)



>mm_chr9_94702970_94703794
          Length = 825

 Score =  789 bits (408), Expect = 0.0
 Identities = 420/424 (99%), Gaps = 1/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttccctttgag-aaacaccttttcctatgtatttgtctgtgtgctgtagaggtttcag 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttccctttgagtaaacaccttttcctatgtatttgtctgtgtgctgtagaggtttcag 565

                                                                       
Query: 60  ccttaccctttgtttttaccagagtatattttcctttctaaggccccaccagagaattca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccttaccctttgtttttaccagagtatattttcctttctaaggccccaccagagaattca 505

                                                                       
Query: 120 cgaatctagtagtcctatgttgcataggattgggtcacttagccaatttcattcactttg 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaatctagtagtcctatgttgcataggattgggtcacttagccaatttcattcactttg 445

                                                                       
Query: 180 tcacccaggaattcataatttggaaactaaatttcttcgttcaacaaataattatcagta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacccaggaattcataatttggaaactaaatttcttcgttcaacaaataattatcagta 385

                                                                       
Query: 240 gattatgcctgctctctaggagactacactttaggtgtaacagttcattaactcatttca 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattatgcctgctctcaaggagactacactttaggtgtaacagttcattaactcatttca 325

                                                                       
Query: 300 ttcacattgtggctaagagctctacagagaaataaagatggcccacaggcccaactctga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcacattgtggctaagagctctacagagaaataaagatggcccacaggcccaactctga 265

                                                                       
Query: 360 gtcctggagaaagctgagggatctctagcttacacagttcagtttttaaaatgttgggtc 419
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 gtcctggagaaagctgagggatctctagcttacacagttcagttttaaaaatgttgggtc 205

               
Query: 420 tggg 423
           ||||
Sbjct: 204 tggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 825
Length adjustment: 9
Effective length of query: 415
Effective length of database: 816
Effective search space:   338640
Effective search space used:   338640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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