Query= MSMg01no459_k16.b1 MSMg01no459_k16.b1 CHROMAT_FILE:
MSMg01no459_k16.b1 PHD_FILE: MSMg01no459_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:40 2005
(482 letters)
>mm_chr9_90131259_90132140
Length = 882
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 1 ggggtcctctatgagactcccctgatgaactgagtttaaatttcacactgttgtacaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggggtcctctatgagactcccctgatgaactgagtttaaatttcacactgttgtacaaga 261
Query: 61 cttgagggtcctactcctactgctgagctagcaatttacaaagtctaattaactgatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttgagggtcctactcctactgctgagctagcaatttacaaagtctaattaactgatagc 201
Query: 121 tgtcttagtgacttagttcagttgtcatgatagagtaccatgacccaggcaacttataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtcttagtgacttagttcagttgtcatgatagagtaccatgacccaggcaacttataaa 141
Query: 181 agaaagtgtttgattcaggggttaagtttggaaacggttagagtccccatggtgctgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agaaagtgtttgattcaggggttaagtttggaaacggttagagtccccatggtgctgggt 81
Query: 241 tcagtagctgatagcttacatccttatccacacgtaggaagcagagagagttaactggaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tcagtagctgagagcttacatccttatccacacgtaggaagcagagagagttaactggaa 21
Query: 301 atgacctgggtttttgaaac 320
||||||||||||||||||||
Sbjct: 20 atgacctgggtttttgaaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_k16.g1 MSMg01no459_k16.g1 CHROMAT_FILE:
MSMg01no459_k16.g1 PHD_FILE: MSMg01no459_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:40 2005
(384 letters)
>mm_chr9_89937327_89938108
Length = 782
Score = 665 bits (344), Expect = 0.0
Identities = 373/384 (97%), Gaps = 3/384 (0%)
Strand = Plus / Plus
Query: 1 catgctccacttccagatcagctggggtcttagccaagtcactcataggctcagtcacct 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 catgctccacttccagatcagctggggtcttagccaagtcactcacaggctcagtcacct 260
Query: 61 catctagatgaggataaagagtccagactcccaacattcatccccgtgaagcttgtggca 120
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 catctagatgagaataaagagtccagactcccaacattcattcccgtgaagcttgtggca 320
Query: 121 cttggaggcagtgagtttaaaccacagagcctgttctcttgacctctcctatgataaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggaggcagtgagtttaaaccacagagcctgttctcttgacctctcctatgataaacc 380
Query: 181 tcttaagctttctccagcctttgtcatcagaagaaggcacttgactgcatgtctttgttt 240
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tcttaagctttctccagcctctgtcat---aagaaggcacttgactgcatgtctttgttt 437
Query: 241 tgtttttttggttttttttggtttttcgagacagggtttctctgtgtatccctggctgtc 300
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 438 tgtttttttgggtttttttggttttttgagacagggtttctctgtgtaaccctggctgtc 497
Query: 301 ctggaactcacactgtagaccaggctggccttgaactcagttgactgcatgtcttacttc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 498 ctggaactcacactgtagaccaggctggccatgaactcagttgactgcatgtcttacttc 557
Query: 361 ctcattgctacatactcattgcta 384
||||||||||||||||||||||||
Sbjct: 558 ctcattgctacatactcattgcta 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 782
Length adjustment: 9
Effective length of query: 375
Effective length of database: 773
Effective search space: 289875
Effective search space used: 289875
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
