BAC Information

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BAC

Clone NameMSMg01-460B05
Chromosome9 (Build37)
Map Location 38,255,910 - 38,256,488
singlet/doubletsinglet
Overlap geneOlfr902
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901
Downstream geneOlfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460B05.T7 (MSMg01no460_b05.b1)MSMg01-460B05.TJ (MSMg01no460_b05.g1)
ACCAG545518AG545519
length754728
length of high quality
(start - end)
193 (39 - 231)576 (68 - 643)
definitionCHROMAT_FILE: MSMg01no460_b05.b1 PHD_FILE: MSMg01no460_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:13 2005CHROMAT_FILE: MSMg01no460_b05.g1 PHD_FILE: MSMg01no460_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TAGTAACGAGGCAGTTTTACAAGTACAGTATTTGCCAGAGAATGAGAAGG
AACCAGAAGATTAGAATAAATTGCCAGAATTAGTTCCAGGCCAAGTAGAT
CAATTAATTCAGTCAGAAAGTGAAAGAAGCCAGTTTGAATTGGTCAGCTA
GAGAAGAGTTTGGGCCAAAATAGGTAGGNTTANNAACCTAGAACTGGCCT
AGAATTTCAGAAANGAGCNNTAGGAAGGATTAAGTNTTTTTAATTTTTTA
AAAANNNNNNNNNNNNNNNNNNNNNTTTTNTTTTTATATTTATATATATT
TATAATTTTTTTTTTTTTATNNAANATATAAATTTTTTTATTCNTTATTG
GNATGATGTGTAGGNTAGCNCCNNTCCTACCTCTTATTTCTCTATTTATT
GTTGATATTTTCTTCATTTGTTTTTTTCCATTTTTTTCCAGCATTACCCN
NTTTTTTTTTATTGTGTTTGGGTGGTGNAAGTGCTAAAGCTGAATAAGAA
TTAAGAACCCCCAACCTAATTAAGAAGGNAGAAAGAAGAAGATGTTCCTT
GCTGTGTATCTTTCTTTCTTTNTCCCTCTTTGAATTTGTTTTCTNTCCTG
TTTTGCATCGTTTGTACTATTTTTATATTTATAAGAATAGGTATCGTCAC
CCTCGTACTCTTGCTTTTTGTTGCCTGCTTGTTTTCTCTCTATCTCTAAG
GATN
GTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTCACCAAGGAGACATTTACTGAGTCCATTCT
TTTCCAAGGGAATCTATAGACTCAGGAAAAAAGAGTTGTATTAGAGGATG
ATCCACACTCAGTCATGGGTCAATCTCCCACTATTTCTACAGAAGCAGTT
GTTGTAGTTGCAAGCAAATTTTCTTACAGTCATAAGGCCAGTAATATGAA
GTTTCAATATTATTTCTGAAAAAGAAAATACATGCAAAGGATGAAGAAGA
AAAGCACGAAAAATGATTAAACTTTTCCCACTTAAGTTTTTCTTGACAGT
AGTCCTCCCTACATTAATGATGTCTGAAGCAGGTGTCTTGGCAACACAGA
GCTACATTCTGCAGCTACAGATTTCCTCTACTATGGTATGAACGAAAAAC
ATGTGTTTAATCCAAAACTATAAGAAGAGTGATGTAACTACTGCCCAATA
TCACAAAGTCATTAATCTTCAGACTTGATCTTGGGCATGCATAAGAATCA
CAATAGAAATATTGCAAATCCAGNTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCCTTTCTCTCTCTCCTTCTCTCCTCCTCCCCC
CTCCCTCCTTTCCTCTCTCTAACCTTCCCACTTCTCTCTGGCCCTCTTTT
CTCCTTCTGCCCTTTCGTGCCCGGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_b05.g1 MSMg01no460_b05.g1 CHROMAT_FILE:
MSMg01no460_b05.g1 PHD_FILE: MSMg01no460_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:13 2005
         (576 letters)



>mm_chr9_38255781_38256758
          Length = 978

 Score =  969 bits (501), Expect = 0.0
 Identities = 558/582 (95%), Gaps = 12/582 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcaccaaggagacatttactgagtccattcttttccaagggaatctatagactcagga 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 708 agtcaccaaggagacatttactgagtccattctttt-caagggaatctatagactcagga 650

                                                                       
Query: 61  aaaaagagttgtattagaggatgatccacactcagtcatgggtcaatctcccactatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaaaagagttgtattagaggatgatccacactcagtcatgggtcaatctcccactatttc 590

                                                                       
Query: 121 tacagaagcagttgttgtagttgcaagcaaattttcttacagtcataaggccagtaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tacagaagcagttgttgtagttgcaagcaaattttcttacagtcataaggccagtaatat 530

                                                                       
Query: 181 gaagtttcaatattatttctgaaaaagaaaatacatgcaaaggatgaagaagaaaagcac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattttcaatattatttctgaaaaagaaaatacatgcaaaggatgaagaagaaaagcac 470

                                                                       
Query: 241 gaaaaatgattaaacttttcccacttaagtttttcttgacagtagtcctccctacattaa 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 469 gaaaaatgattcaacttttcccacttaagtttttcttgacagtagtccttcctacattaa 410

                                                                       
Query: 301 tgatgtctgaagcaggtgtcttggcaacacagagctacattctgcagctacagatttcct 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgatgtctgaagcagatgtcttggcaacacagagctacattctgcagctacagatttcct 350

                                                                       
Query: 361 ctactatggtatgaacgaaaaacatgtgtttaatccaaaactat---aagaagagtgatg 417
           ||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 349 ctaatatggtatgaacgaaaaacatgtgtttaatccaaaactataagaagaagagtgatg 290

                                                                       
Query: 418 taactactgcccaatatcacaaagtcattaatcttcagacttgatcttgggcatgcataa 477
           ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 289 taactactgcccaatatcacaaagtcagtaatcttgagacttggtcttgggcatgcataa 230

                                                                       
Query: 478 gaatcacaatagaaatattgcaaatccag----ntctctctctctctctctctctctctc 533
           ||||||||||||| ||||| |||||||||     ||||||||||||||||||||||||||
Sbjct: 229 gaatcacaatagagatattacaaatccagtgttctctctctctctctctctctctctctc 170

                                                     
Query: 534 tctctctctctctctctccctttctctctctcc--ttctctc 573
           |||||||||||||||||| ||  ||||||||||  |||||||
Sbjct: 169 tctctctctctctctctctct--ctctctctccctttctctc 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 978
Length adjustment: 10
Effective length of query: 566
Effective length of database: 968
Effective search space:   547888
Effective search space used:   547888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)