BAC Information

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BAC

Clone NameMSMg01-460O06
Chromosome9 (Build37)
Map Location 124,039,896 - 124,040,335
singlet/doubletsinglet
Overlap geneCcr5
Upstream geneExosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460O06.T7 (MSMg01no460_o06.b1)MSMg01-460O06.TJ (MSMg01no460_o06.g1)
ACCAG546141AG546142
length712705
length of high quality
(start - end)
497 (41 - 537)439 (70 - 508)
definitionCHROMAT_FILE: MSMg01no460_o06.b1 PHD_FILE: MSMg01no460_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:17 2005CHROMAT_FILE: MSMg01no460_o06.g1 PHD_FILE: MSMg01no460_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTCTTCAAGACTTTTTATCATGAATGGGAGTTGGATTTTGTCAAA
TGCTTTCTCCTCATCTAATGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATACTGGATTACGATGATGGATTTCTGTATACTGAACCATCCC
TGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGACTCTAA
CAAAGGAAGTGAAAGATCTGTATGATAAGAATTTCAAGTCTCTGAAGAAA
GAAATTATTTGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC
AGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATGAATT
AGAAAGGGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGAATAG
CAAAAACTCTGCTCAAGGATAAAAAAAAAACCTCCAGTGGAATCACCATG
CCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAACTGTATGGTAC
TGGTATAGAGACAGACTAGTAGACCCATTGGATTAGAATTTGAAGACCCA
GAGATGAATCCCCACTCTTTATGGTCTCCTTGATCTTTGATAAGGCACCC
AAAACCCATTTA
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGGACTGAATAACTGCAGTAGTTCTAATA
GACTAGACCAGGCCATGCAGGCAACAGAGACTCTTGGAATGACACACTGC
TGCCTAAACCCTGTCATCTATGCCTTTGTTGGAGAGAAGTTCCGGAGTTA
TCTCTCAGTGTTCTTCCGAAAACACATTGTCAAACGCTTTTGCAAACGGT
GTTCAATTTTCCAGCAAGACAATCCTGATCGTGTAAGCTCAGTCTATACC
CGATCCTTAGGAGAACATGAAGTTTCTACTGGTTTATGACCTGGTTGACT
TTTGTGTATCACGTAGTTTTTCTATGCAGCTTGGGAGTAGGAATGGTTCT
TTTAAAAAAGAAATTAGTATCATAGAGGGCCCAAGATACATGCATCTTTT
TGATATTTATTTTTAGATAGATTGGATCTTTTAAAACTGAATGGGGAGGT
TGGGGTGGNTTNTNCCTTNTTTTTTTCTCTTTTGCCGCTTTTCTCCTCTT
TCCTTTGTTTTCTCTCCTGCTCTTTATTCTTCTTGTTCCCTTTCTTTCGC
CCTTCCTCCGCTCTTCGCCCTTTTTTTTTCCCCTTTTTTCCGCTTTTTTT
TTATGGTCCCTCTTTCTCTTTGTCTCCCTATCTCCTTTTTTTATCCCCCC
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_o06.g1 MSMg01no460_o06.g1 CHROMAT_FILE:
MSMg01no460_o06.g1 PHD_FILE: MSMg01no460_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:17 2005
         (439 letters)



>mm_chr9_124039696_124040535
          Length = 840

 Score =  804 bits (416), Expect = 0.0
 Identities = 434/440 (98%), Gaps = 1/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggactgaataactgcagtagttctaatagactagaccaggccatgcaggcaacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggactgaataactgcagtagttctaatagactagaccaggccatgcaggcaacagag 260

                                                                       
Query: 61  actcttggaatgacacactgctgcctaaaccctgtcatctatgcctttgttggagagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcttggaatgacacactgctgcctaaaccctgtcatctatgcctttgttggagagaag 320

                                                                       
Query: 121 ttccggagttatctctcagtgttcttccgaaaacacattgtcaaacgcttttgcaaacgg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttccggagttatctctcagtgttcttccgaaaacacatggtcaaacgcttttgcaaacgg 380

                                                                       
Query: 181 tgttcaattttccagcaagacaatcctgatcgtgtaagctcagtctatacccgatcctta 240
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |
Sbjct: 381 tgttcaattttccagcaagacaatcctgatcgtgcaagctcagtctatacccgatccaca 440

                                                                       
Query: 241 ggagaacatgaagtttctactggtttatgacctggttgacttttgtgtatcacgtagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagaacatgaagtttctactggtttatgacctggttgacttttgtgtatcacgtagttt 500

                                                                       
Query: 301 ttctatgcagcttgggagtaggaatggttcttttaaaaaa-gaaattagtatcatagagg 359
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ttctatgcagcttgggagtaggaatggttcttttaaaaaaagaaattagtatcatagagg 560

                                                                       
Query: 360 gcccaagatacatgcatctttttgatatttatttttagatagattggatcttttaaaact 419
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gcccaagatacatgcatctttttgatatttatttttagatagattgggtcttttaaaact 620

                               
Query: 420 gaatggggaggttggggtgg 439
           ||||||||||||||||||||
Sbjct: 621 gaatggggaggttggggtgg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space:   357330
Effective search space used:   357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)