BAC Information

Click to search

BAC

Clone NameMSMg01-461M11
Chromosome9 (Build37)
Map Location 61,765,271 - 61,765,441
singlet/doubletsinglet
Overlap geneKif23
Upstream geneA430102L10, LOC100040481, Tle3, LOC100039851, Rplp1
Downstream genePaqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M11.T7 (MSMg01no461_m11.b1)MSMg01-461M11.TJ (MSMg01no461_m11.g1)
ACCAG546822AG546823
length739717
length of high quality
(start - end)
67 (146 - 212)165 (151 - 315)
definitionCHROMAT_FILE: MSMg01no461_m11.b1 PHD_FILE: MSMg01no461_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:31 2005CHROMAT_FILE: MSMg01no461_m11.g1 PHD_FILE: MSMg01no461_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGAATCTAAAATTGCGGCGCTATACGACTCCTATTCGAACGCCACCGCG
GAANCNGATTTTGCAAAATACTGCAGNCNGNGCACACACAGGTACGTATT
GCTTTCAAGACAATGTCTCACTGTGCAACTCTGGCTGTCCTAAAACTCAT
TATAGACCATACTCATCCCAAACTCACAGAGATCTGCCTGTCTCTGCCTC
CTATGTGCTGCAGTCAAAGGTGTAAGCCACTATGCCCACCTACCTCTTAT
CTCCCGAATGAATAAGCACAATGTTTGTTGTCATAGCAACTGTCTCAAAT
TAAAGACACTTTTTTTTTTTATCACAATCTTTGTGAGAGGAAGAAATAGT
TCCTGTCCACCCCCACCCCTACTGAAGTGTGTGAGTGTGTCAGTGTGTGA
GTATGATTGACAGTACCCACTTTCTCTATGCCCTCTCCCTCCTGACCTTT
TTTATCTCTATATTGTTTCGTTTTTCCCCTTCTCTGTCTTTACCTTTAGT
TATACTCCCTTTCCCCTTACTTCCTTTCCCATCCCGCCTTTTTTCTCTCT
TTCTCATATATTCCCATCTCTTCCTTTGTTCTTTCAAATCTTTTCTAATT
CCATCATTATCGCTGTTTTATTACCCCCTCTTTCTTTTTTTCCTCTTTTT
TTTCTTTTTATTTTTTTCCCCCCCCTTATAATTTCCTCTTCTCTTCTTTA
CCTCCTTTTTTTTCTCTTTTCTTTTACCCCCTTTCACAN
TCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTAAATGTTGGTTTTGTGT
TTTACGCGCAAGAAACCTTGAACTGACAACCCCGGCACCATAAGACCGTT
TTTACTCGTGTTGGTGATTTATCCAAAGCTGTTCCAGACGCAGTGTCTGA
GTCATCTTGCAGAACAATGTATCCAGATCACGTTGCCCTTTTTTATTGTG
ACTTTTTCAACTGCTCTGAATATTTTCTAAGGTTTTATATAAAAAAAACA
AACAAATGCTGCTATTGTTTTTCTGCGAAAAAAAAATGCACTTTACACAT
ATTTAACAATTAAGACTTTCATAATAAAGATGGTGACTGGCCAGTGGTGA
AACCATTTTAGGAAGGTATTTAGAGTTTTGTATGTATATATTCACTTTCT
GACCTTTATATATGCCAAAACAACTGAATTAACAAGGCACTAAGAGATGC
AAACTTGTGTGGTGGCCATTCACTCGGAATGCTCCCAAGCACCTACAGTG
GTCTGTTTATCTGGTACTCAGTATCTGGGGGCTACAAGAATAGAGATCAC
TGGCAAAGAGGAAGAAACGTGTCTGCGAATGCTTGTTGACCCTTATGGGT
ATGAAACAGGCTCACAATTTTCCTCTGACCCCCCAAATTGCCTTATACAT
ATCCGTCTTTAGGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m11.g1 MSMg01no461_m11.g1 CHROMAT_FILE:
MSMg01no461_m11.g1 PHD_FILE: MSMg01no461_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:31 2005
         (165 letters)



>mm_chr9_61765094_61765658
          Length = 565

 Score =  288 bits (149), Expect = 1e-82
 Identities = 163/171 (95%), Gaps = 6/171 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactcgtgttggtgatttatccaaagctgttccagacgcagtgtctgagtcatcttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttactcgtgttggtgatttatccaaagctgttccagacgcagtgtctgagtcatcttgc 289

                                                                       
Query: 61  agaacaatgtatccagatcacgttgcccttttttattgtgactttttcaactgctctgaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agaagaatgtatccagatcacgttgcccttttttattgtgactttttcaactgctctgaa 229

                                                              
Query: 121 tattttctaaggttttatataaaaaaaa------caaacaaatgctgctat 165
           ||||||||||||||||||| ||||||||      |||||||||||||||||
Sbjct: 228 tattttctaaggttttataaaaaaaaaaaaaaaacaaacaaatgctgctat 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)