BAC Information

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BAC

Clone NameMSMg01-462M19
Chromosome9 (Build37)
Map Location 24,485,582 - 24,485,865
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneTbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462M19.T7 (MSMg01no462_m19.b1)MSMg01-462M19.TJ (MSMg01no462_m19.g1)
ACCAG547601AG547602
length788829
length of high quality
(start - end)
284 (75 - 358)94 (160 - 253)
definitionCHROMAT_FILE: MSMg01no462_m19.b1 PHD_FILE: MSMg01no462_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:55 2005CHROMAT_FILE: MSMg01no462_m19.g1 PHD_FILE: MSMg01no462_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATCAGTTAACGGGCGTCTCCATACCATAGTGCAGCCCT
GCATTAAGAAAGGAATGACTGCTCTGCTAAGGTGTAACACGTGCTCGTCA
GAATCAGCGGACTGGCCCAGGTTACTTAATATCTATACCTGGTGACTGAA
CTGACTTCTGCTGTTGATCATAAAGGCTGTGCTGCAAAGAGCTCACCCTG
GTGTGGTAAATCCAGCACAGGGAACAGTAGCCGCCTTAGATCAGCTTTCA
ACATAAAACTGGAGGGTTCTAGAGACCGTGCTACTTCACATTCTTTTCAT
CATAAATTTTCTAGTTTCAAATAAAAACCAAAGTGCCCCAGTTTTTACAG
GNAGAAAATCAAGTGCCCTATTCTTCAAAAAGAAAATTAAAAAAAACTTT
TTCCGTTTTCCTTTTAATTAACCCTTCCCCCAAACAGAACATCCGGAACA
AACCTTTCCCTTTTCCCCAATTTCTCTCCAGGGTTCCCCCCCTAACCCCC
CCCAAATCCCCTTTTTTCCAAAAAACCGGGGTCCTCCAGGGGGCCCTGGA
AAAAAACCCCCCCGGGGTTTTTTCCCCACAAAATTGGCCCCTCCTCTTTT
CATAAAAAAAAAAAAAATTTCCCTTTTTTCTCCCGTGTTTCAAAACACCG
TGTTTTTTTTTATACATATTGGTGACCCAAAAAATATCTGGGGGGTGTTT
TTTAAATATAACCACCCTTTCGTGGTTTATTAAATATT
NNNCCCGATNNANNNNNNNNCCTGNNNNNGNCTGGTTTCCCAATTTANGT
GAACTATANAATTTTCCGCGAAATTCANTGATATACCTTGTGAGCAGNCA
CTTTGTTCCGGNTCAGGTACACTGGCATTGCTACAGACTCTGNANAACCG
AAAGTCANCCATGACGTCACACCTGCCCCATGTACAGAAACCAAAGGTTG
AAAACCTTCTGACCGAGGCTCTCAATGTGAGTCCACAGAACCCCTGCAAT
TTCTATGNNNAAAGANNNAACCGNAANNGNNAAAAGGTTGCCATTCTTAA
NNTTCTATGCCAACTAATCTTTTTTTNNNTANNNAAATAATCTCCATNNN
NNNNNTGTTNTATCGTGTTTGGCGCGCGCGGAGGTGGTGGNNNNNNNTNN
NNNNCACCNNNCGAGGGGCCCCAGCAACCCCTGTGCCCCCTCGTTAAAAG
GGGGGGGCGGGGGGTCTTCTGGGGGGTGGGGGGGGGGGGGGGGGGGCGGG
GGCGTGGGGGGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGG
GGGGGTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTNNNNNNNNNNNNNTNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTNNNNNNNNNNNNNTNTTTTNTNTTNTTTNNNTTTNTTNTN
NNTTTTTGTTTTTTTTTTTCTCTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_m19.b1 MSMg01no462_m19.b1 CHROMAT_FILE:
MSMg01no462_m19.b1 PHD_FILE: MSMg01no462_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:55 2005
         (284 letters)



>mm_chr9_24485382_24486065
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgtctccataccatagtgcagccctgcattaagaaaggaatgactgctctgctaaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgtctccataccatagtgcagccctgcattaagaaaggaatgactgctctgctaaggtg 260

                                                                       
Query: 61  taacacgtgctcgtcagaatcagcggactggcccaggttacttaatatctatacctggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacacgtgctcgtcagaatcagcggactggcccaggttacttaatatctatacctggtg 320

                                                                       
Query: 121 actgaactgacttctgctgttgatcataaaggctgtgctgcaaagagctcaccctggtgt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaactgacttctgctgttgctcataaaggctgtgctgcaaagagctcaccctggtgt 380

                                                                       
Query: 181 ggtaaatccagcacagggaacagtagccgccttagatcagctttcaacataaaactggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaaatccagcacagggaacagtagccgccttagatcagctttcaacataaaactggag 440

                                                       
Query: 241 ggttctagagaccgtgctacttcacattcttttcatcataaatt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttctagagaccgtgctacttcacattcttttcatcataaatt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)