BAC Information

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BAC

Clone NameMSMg01-463C09
Chromosome9 (Build37)
Map Location 120,491,668 - 120,491,918
singlet/doubletsinglet
Overlap genenone
Upstream geneScn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
Downstream geneLOC100040010, Ctnnb1, Ulk4, Trak1, Cck, Lyzl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463C09.T7 (MSMg01no463_c09.b1)MSMg01-463C09.TJ (MSMg01no463_c09.g1)
ACCAG547868AG547869
length796751
length of high quality
(start - end)
239 (81 - 319)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no463_c09.b1 PHD_FILE: MSMg01no463_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:26 2005CHROMAT_FILE: MSMg01no463_c09.g1 PHD_FILE: MSMg01no463_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGTTTCCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAACAC
ATCCGCGGAATCAGTCCTTGGCCCAATGCTAGAGAAGACAACTGACTCCG
CAAGTTCTCCTCTAACTGCCACATATATGCTATGGCATACCCCCACACAC
ATATCACATGCACACACATACACACATATGTATACACACATACACAAATA
CATACATACAAACATGCACACACACAACATATACATGTACACACATGCAC
ACATACTCACATCACGTACACACACATATACACACACATTCATGCTACAC
ACACACATACACACAATGTACTCTTTTTTTTTTCCATACAAACACAGACA
TACATACACATACACTCTTTATACTCACACATAAACACATATATACATAC
ATACGTATACCATACAGACACACACATACCTCTCTTATAGACATACTTAC
ACACCTACCCATATCCCCTTAGACACAATATACACCCCTATAAATCTTAA
TATTATAATTTTACTCAACAAAACTCTCTAATATATTGCATGAATAATCT
CACACAACCCAGTTTGTAACAAAAAACATCTCTTCTCCTACACTCTTTCT
ATGTTGTAGACTATCATACACTTCTCAAATGCTTCTACCTAAAGCGGTTT
TATACCTCACAAAACGCTTATCTTNTTTCATCTAACTTCATTCTTTTTTC
TAATACCCTTGATGCGCCATTCCACCTCCTCTTGCCATGCAAAGTCTCCT
CTGTTCACTCCACTCTCACCACTTTCGTCCCTCCACACAATTCCCG
TTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCAGCAATTCTTAATGTGCGTTCACGTGGTG
CCACCTACTGGTGAGAAGGAGCTCGAGGAAGCTAAAGCTGCAGGGGGGAG
GCCGAGAAGGACTGACAACCGTGAAAGTCTTCACTGTGGGAGCACGGCCC
TGGGAGACACACGCGCTAACTGGGCAGATGAAGAGGGTATTTCAAATGCA
GCCCAGGAACCAACCAGCACAGCTGGAGGAAAGGGGGGAAGAGGCACAGC
TGCAGGAGGGGCTCGCGGCTCCTGTTTTGTAATCTGAGCTGAGGTGGAGG
GAGTCCCTGGGGATCACCCTGAGTCAGCTCCATCTCCACCAGGTACAGTT
TGAGGTGCTGGAGAAAACTCCTGCACCATCTGATAGCTCTCCGGCACTTC
TTGCATTCACACAGCTTCTCCGCAGAGTGAACAATCTGGTGCTGGAGGAA
GGCCACGCCCCTCCGGAAGGCCCTAAGGTTCTCCTTGCAGACGACAGGCT
TCTCTCTGGTGTCTATCATCCAGTCCTGTCTTAACGCCCCGGCAGAATTC
TTATCTTTTCTGCTCTGCCTGCTCCTGTAGGTGATCCCTTCCAGTCTTGG
CTGGACCTTGAATTTTTTTGCTTCACCCCTTAACCATACCAAAGTAGTTT
TTCCCCCCACTGGGGAACCCGTCTGGGGTTCCCCCCCCCGCCACTCCTAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_c09.g1 MSMg01no463_c09.g1 CHROMAT_FILE:
MSMg01no463_c09.g1 PHD_FILE: MSMg01no463_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:26 2005
         (244 letters)



>mm_chr9_120491468_120492118
          Length = 651

 Score =  431 bits (223), Expect = e-125
 Identities = 241/251 (96%), Gaps = 7/251 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgtgcgttcacgtggtgccacctactggtgagaaggagctcgagg-------aagct 53
           ||||||| ||||||||||||||||||||||||||||||||||||||||       |||||
Sbjct: 451 taatgtgtgttcacgtggtgccacctactggtgagaaggagctcgaggaagtgctaagct 392

                                                                       
Query: 54  aaagctgcaggggggaggccgagaaggactgacaaccgtgaaagtcttcactgtgggagc 113
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 391 aaagctgcagggggaaggccgagaagaactgacaaccgtgaaagtcttcactgtgggagc 332

                                                                       
Query: 114 acggccctgggagacacacgcgctaactgggcagatgaagagggtatttcaaatgcagcc 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acggccctgggagacacacgcgctaactgggcagatgaagagggtatttcaaatgcagcc 272

                                                                       
Query: 174 caggaaccaaccagcacagctggaggaaaggggggaagaggcacagctgcaggaggggct 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caggaaccaaccagcacagctggaggaaaggggggaagaggcacagctgcaggaggggct 212

                      
Query: 234 cgcggctcctg 244
           |||||||||||
Sbjct: 211 cgcggctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 651
Length adjustment: 9
Effective length of query: 235
Effective length of database: 642
Effective search space:   150870
Effective search space used:   150870
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)