Query= MSMg01no464_c22.b1 MSMg01no464_c22.b1 CHROMAT_FILE:
MSMg01no464_c22.b1 PHD_FILE: MSMg01no464_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:51 2005
(548 letters)
>mm_chr9_7649667_7650614
Length = 948
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%)
Strand = Plus / Minus
Query: 1 cccctgcaaacccaaaattcctcagggccattttctgggaacccacagatggacctagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cccctgcaaacccaaaattcctcagggccattttctgggaacccacagatggacctagcc 689
Query: 61 agagagttcaatcaatctgaccagtattcaatttaaagcctgcttcaaacttgactttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agagagttcaatcaatctgaccagtattcaatttaaagcctgcttcaaacttgactttaa 629
Query: 121 attatggtagtgatcttattttcaacaaatgaaattaacagggacccagagcaattgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 attatggtagtgatcttattttcaacaaatgaaattaacagggacccagagcaattgcca 569
Query: 181 ctggactgtattagaaacctggccaggcaaataacctctagatagccaggaagaaactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctggactgtattagaaacctggccaggcaaataacctctagatagccaggaagaaactga 509
Query: 241 gtaagagttttaaaatattcagtgaggtggacatttggtcagagctgaggtgtggccagt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtaagagccataaaatattcagtgaggtggacatttggtcagagctgaggtgtggccagt 449
Query: 301 tctagaggtgtgaacagaccatcagacctggggaaacccagggaacccgagagagcaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctagaggtgtgaacagaccatcagacctggggaaacccagggaacccgagagagcaggg 389
Query: 361 atggttttagggatctgcttgtatttctgtctcccttttcttcttgttctgttcctatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 388 atggttttagggatctgcttgtatttctgtctcccttttcttcttgttctgttcctagcc 329
Query: 421 agggacactgcctcattttctccgctgcctcgttttctccaaccgtgtccttattgactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agggacactgcctcattttctccgctgcctcgttttctccaaccgtgtccttattgactc 269
Query: 481 cttctctgtcacttgggcacagtcaccagcccctctctgccttctccctgtctactctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttctctgtcacttgggcacagtcaccagcccctctctgccttctccctgtctactctct 209
Query: 541 aattaatt 548
||||||||
Sbjct: 208 aattaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_c22.g1 MSMg01no464_c22.g1 CHROMAT_FILE:
MSMg01no464_c22.g1 PHD_FILE: MSMg01no464_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:51 2005
(422 letters)
>mm_chr9_7388258_7389076
Length = 819
Score = 646 bits (334), Expect = 0.0
Identities = 407/444 (91%), Gaps = 23/444 (5%)
Strand = Plus / Minus
Query: 1 ttcttgggcaggttctcacagcctaagcctggattaaaataaagagaggccatggtactt 60
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttcttggtcaggttctcacagcataagcctggattaaaataaagagaggccatggtactt 662
Query: 61 ttgcaatcttgtggccatagttcttgaaaggcagaagg------------------aga- 101
||||||| |||| |||| |||||||||||||||||||| |||
Sbjct: 661 ttgcaattttgtagccacagttcttgaaaggcagaaggcagaagttcttgaaaggcagaa 602
Query: 102 --cctcagaaacccagtaaatactgcatgacctagagttccagatgtgtgggcactgaat 159
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 601 ggcctcagaaacccagtaaatactacatgacctagagttccagatgtgtgggcactgaat 542
Query: 160 attggctgtcactcagggtctgtgatcccatcctctgtccttggagcaaggtgtgtacag 219
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attggctgtcactcagggtcagtgatcccatcctctgtccttggagcaaggtgtgtacag 482
Query: 220 acaaccagagaactgagtagcaaaatctgttttgtataaggaccacagaggactataggg 279
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 481 acaaccagagaactgagtagcaaaatctgctttgtataaggaccacagaggactataggg 422
Query: 280 ctggctcaactggtgaagggctggctgtgcaagggaagagaaggttgagtttgatccgag 339
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 421 ctggctcaactggggaagggctggctgtgcaagggaagaaaaggttgagtttgatccaag 362
Query: 340 aattc-aagtgaaacagtgagacatgatggtatgtgcttgtagcatcccaaaactgggaa 398
||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 361 aattctaa-tgaaacagtgagacatgatggtatgtgcttgtaacatcccagaactgggaa 303
Query: 399 tgcgtgacatgctgggtgagctca 422
|| |||||||||||||||||||||
Sbjct: 302 tgtgtgacatgctgggtgagctca 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 819
Length adjustment: 9
Effective length of query: 413
Effective length of database: 810
Effective search space: 334530
Effective search space used: 334530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
