BAC Information

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BAC

Clone NameMSMg01-464F13
Chromosome9 (Build37)
Map Location 88,097,570 - 88,097,813
singlet/doubletsinglet
Overlap genenone
Upstream gene4922501C03Rik, LOC671706, Tbx18, LOC671731, LOC100039580, LOC384962
Downstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F13.T7 (MSMg01no464_f13.b1)MSMg01-464F13.TJ (MSMg01no464_f13.g1)
ACCAG548784AG548785
length752747
length of high quality
(start - end)
151 (322 - 472)244 (322 - 565)
definitionCHROMAT_FILE: MSMg01no464_f13.b1 PHD_FILE: MSMg01no464_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:05 2005CHROMAT_FILE: MSMg01no464_f13.g1 PHD_FILE: MSMg01no464_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACAAAATTTGCGGCGGTAAAGGAACACTATTTCTTATCTACCGNGGNA
ANNANNCGTTGCCATAACACAACNGNGNGCAAGAGCCTGGGNTCCATCCC
TAGCACTGGGGATATGTCCATTATGCCATCAGTACTGCAGCCACTACTAC
ATGTAGCTGTCAGTAAATACTGGAAATGTTCCAGTACAATCTAAGATGTG
CTACACATACACACATGCCCATACACATATGTACACACACATACTATTTA
TTAAAGGCTTAGAAAAACGTGTGAAGTGTCTCTGTTATATTTATTAAATG
TTAAAATGATAATAGCTCCGTTATATTAGGTTAAATAAAAGAATTTTATC
GATTTATTTTTGCTTTTTGTAAAATGTGGCTACTAGAGATTTTAGATACT
TCACTCATTATGGAAAATGAAAAAAAACAGAAATGTACTGGTTAGATTTT
TGTCAACTTGAAAGAAAATACAGCCGTCTGGGAAGAGGGAACCTCACTGG
ATTTACCTCCCTCAGATTACCCTGGGAGATGTGCGTGGGTCGTTTTCTCG
ATACTGATTGATGTGGTCCAGTTTACATTTTGCGCTGCCTCCCTGGAAAG
CTCGTCCTACGTTGCATAATACAAGCAGGCTCAGCCAACCGTTTTTTTTT
TTTTTGCTCTACACCCTGCCCCCAGCTTCCTGCCCCGGCTTCCCTCTTGG
GGAATTGAACGTGTTAAAAGATAAACCCCCCAAACCCTAACCCTATTTTT
TG
ACCATGAAGTGGGTAGGCCGGGGGNGGCCTGGGTCAATACTCGGGGNGAA
NNANAGAAGTAACAAAACAATCCAGANACTCCAGTTGGCTCAGATCTGAC
ACCAAATTAAGATCTCACCGTTGAGAAGGGGCCACACACACACTTGGATG
AGGTCACCATTCTGCATTTGACATTGATTGTGCTCTCTGGATTTACTTGC
TGAGCTAAGAAATTCGGAATATGTTATAGAGCTAATGGCAGGTCTTTTTA
GCTACATGAAAATATCCAACCAACATATATGAGCAAACACGATCAGGACT
CCTTCTTGCACTATAGTCCTGTCCCCAACACAGCAATAATCTGAGAACTT
TGAGCCCGTTTCTTAAGCCAAATCAGGCCCCGAAAACATTTCAGAATCTC
TGTCTGTGGGAATATGCCCTCAGCTGCTCGTGGGAATAGGTAATAAAATG
GGGTAAGACCAATACACACAGTTTTATTTCTAGACCTTATAGACAAAACA
GAAATAATCTAAAGTTGATGGATTGTCTCAACTGTGCTATAGCAGTGATT
TATATATCTTGTAATCTTAATATTGTCTCCAAATGTGTGAAAGAAGGGAC
TGCACCACTTTCAATCATTCAATTTTGATGCCAAAATAAATTTTTATTTT
TTTTTGGCAGCTCCAGACAGTTATGGATCTCACTCCGAAATGTGTCTGTG
CCCCATGCCCTCCTTTGAAATAGTCTAATCCCACGGGCTCTAAGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f13.g1 MSMg01no464_f13.g1 CHROMAT_FILE:
MSMg01no464_f13.g1 PHD_FILE: MSMg01no464_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:05 2005
         (244 letters)



>mm_chr9_88097370_88098013
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccccaacacagcaataatctgagaactttgagcccgtttcttaagccaaatcaggcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccaacacagcaataatctgagaactttgagcccgtttcttaagccaaatcaggcccc 260

                                                                       
Query: 61  gaaaacatttcagaatctctgtctgtgggaatatgccctcagctgctcgtgggaataggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaacatttcagaatctctgtctgtgggaatatgccctcagctgctcgtgggaataggt 320

                                                                       
Query: 121 aataaaatggggtaagaccaatacacacagttttatttctagaccttatagacaaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaaatggggtaagaccaatacacacagttttatttctagaccttatagacaaaacag 380

                                                                       
Query: 181 aaataatctaaagttgatggattgtctcaactgtgctatagcagtgatttatatatcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataatctaaagttgatggattgtctcaactgtgctatagcagtgatttatatatcttg 440

               
Query: 241 taat 244
           ||||
Sbjct: 441 taat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)