BAC Information

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BAC

Clone NameMSMg01-467A19
Chromosome9 (Build37)
Map Location 90,731,855 - 90,732,014
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467A19.T7 (MSMg01no467_a19.b1)MSMg01-467A19.TJ (MSMg01no467_a19.g1)
ACCAG550853AG550854
length748809
length of high quality
(start - end)		591 (39 - 629)163 (70 - 232)
definitionCHROMAT_FILE: MSMg01no467_a19.b1 PHD_FILE: MSMg01no467_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:47 2005CHROMAT_FILE: MSMg01no467_a19.g1 PHD_FILE: MSMg01no467_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCT
TTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCA
TCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAATGTGT
TCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATATT
CATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTG
GTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTA
CCTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATC
TTCTTTAAAGGTCTGATAGAACTCTGCACTAAATCCATCTGGTCCTGGGC
TTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGAT
ATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTACCTG
GTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTG
AGNATAAGCTTTTGTAGAAAGATCTGATGGTGTTTTGGATTTCTTCAGAA
TCCGTTGTTATGCCTCCCTTTTTCTTTCTGAATTTGTTGGATACGAAT

TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTAGTCATTACTTTTAACTTTCAATTTGAA
AAACCTTATAAGCTTCCTAAAAACTTCAGAAAATGATTAGCAAGTTACAG
AAGGCAGCTAAGTAACTTGAAATTCTTTGGCTTCAGTAGCTAGTGGGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTNTNNNNNNNNNNNTTNTTTNTTTTTTTTTTT
TTTTTTTTTNTTTNTTTTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTNNNTNNNTNNNNTTTTTNTTTTTTTTTTTTTTTTNNN
NNNNNTNTTNNTTTTTNNNTTTTTTTTTTNTTNNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTNNNTNTCTTTTTTTTTTTTTNNTTTNTTTTTTT
TTTTTTTNNTTTTTTTTTTNTTTTTTTTNNTNTTTTTTTTNNTTTTTTTT
TTTTTTTTTTTTTTNTTNTNTNTNNNTTNTTTTTTTTTTTNTTTTTTTNT
TNNTTTTTTTTTTNTTTTTTTTTTTTNTTTTTNTTNNTTTTTTNNTTNTT
TTTTTTCTCCTTTTTTTCTCCTTCCTTTCTCCTCTTCCTTTCCCTTTCCC
TCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_a19.g1 MSMg01no467_a19.g1 CHROMAT_FILE:
MSMg01no467_a19.g1 PHD_FILE: MSMg01no467_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:47 2005
         (163 letters)



>mm_chr9_90731692_90732254
          Length = 563

 Score =  302 bits (156), Expect = 8e-87
 Identities = 159/160 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagtcattacttttaactttcaatttgaaaaaccttataagcttcctaaaaacttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctagtcattacttttaactttcaatttgaaaaaccttataagcttcctaaaaacttcag 264

                                                                       
Query: 61  aaaatgattagcaagttacagaaggcagctaagtaacttgaaattctttggcttcagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaatgattagcaagttacagaaggcagctaagtaacttgaaattctttggcttcagtag 204

                                                   
Query: 121 ctagtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 160
           |||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 ctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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