BAC Information

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BAC

Clone NameMSMg01-470A01
Chromosome9 (Build37)
Map Location 77,636,171 - 77,636,346
singlet/doubletsinglet
Overlap geneGclc
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31
Downstream geneLOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470A01.T7 (MSMg01no470_a01.b1)MSMg01-470A01.TJ (MSMg01no470_a01.g1)
ACCAG553106AG553107
length750756
length of high quality
(start - end)
176 (78 - 253)242 (84 - 325)
definitionCHROMAT_FILE: MSMg01no470_a01.b1 PHD_FILE: MSMg01no470_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:46 2005CHROMAT_FILE: MSMg01no470_a01.g1 PHD_FILE: MSMg01no470_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATCC
GCGGAATTCACTGTCCATTCCACCTAACTTTACGTAGAGTCCTTTTACTC
ATCAGGATAAATTGTCTCTACTTGAACTCTGATTTTCCTTGCAAGCCTAA
ATCTAAGGTTTTGTTTAAAAATAATGGTGAGGTGGTCCCACAAACTAGAG
CCATCTCCCTGATATTCCCATTGGTCTACAATGTCAAAATTAGGCTTGCT
GGTAGAATTCAGGCAAGGTTTCAGTGCAACCAAACTTAGCATGTTTGCAG
AGGATGTGATGGCAAATTAAGAGTTTTTTTTCCCCACCCCCACAAAGAAC
ACAGAAGAGGCTTTCTGTATGAACGCGGCCAGCCAAGGTTCTGAGCATCC
CCTTGCTCACGCCACGAAGTTATGTAATCTGCAGAAGCCCTTAATGTGCT
CCACCCCATGACCTCTTGGCCACGTCATCCTCTGACCCATTGCCCCACAG
GACATAACGCCCCATGTATGCCCCCTCTCTCGCTGTGTTCCCCTCCCCCG
GATTATCGTTGCCCACCACCGTTCCCCTTTTTTCTCCTACCACCCCCTCC
CACCTCCTCTAAAAAATCTTTTGTTTCTCCTCACCCGCCCCCCCCCCTTC
CCCTTACCGCACCCACACCTCTCTCTCCTTTCCCCATCCCCCCCCCCCCC
ACTTTCCTTCCCTCTCCTCCTCTTTCCCCCTCCCCCTTTCCACCTCCACC

GTTCCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGCGGCTCAGACT
GTAAACCAGTAACTTTACCTACTGACCTCAGTAAGAAAGTTGTTCAAGGG
AAGGGGTAACTGAGAACCCTGTTGTAGATTTGGTCTAATGCCACTTTAAT
TATGTTAATTTGCCCCCCCCACCCCCATTGCACAAGAATCCTCAGTCTGC
ATGTAAAATTCGGAGGGACCCTGCCCCCAGTTAGTTTTGATTGGTAAATA
AAGTCGCTGGCAGCCAATGGCTGGCCAGGGATTATTTATGTGGCACTTTA
GGATTCCTGGGCAAGAGACCGATGAAGGGGAGAAAAAGATAGCCACCATG
CCCCGCAAGGAGCATCACGCCCCGCCTGATGCGCTGTACCGATAATACCG
CTGTCTCGCCCGCGCTGCGTTCACCCTTTCCCGACCTTTCTTTCTTCCTG
TACCCCCTTCTTTCCCCCCCTTTTTCTCTTCTTTTCCCTCTTCTCGTCCC
CCCCCATTGCTTCCCCCCCTTTCTCCCTTGCTCTCCTCCTCCTTTTCCCC
TCTTTCCCCTCTCCCTTCCTCTCTCTACCCCCCTCCCCCTTCTCCTTTCT
CTTTTCCCTTCTCTTCTGCCCCCCTCTTTCCCTCTCCCCCTTTTCCCTCT
CCCCCTCTCTTCTTTCTCTTCTCTCTCTTTTCTTTTCTTCCCCCCCTTTT
TCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_a01.b1 MSMg01no470_a01.b1 CHROMAT_FILE:
MSMg01no470_a01.b1 PHD_FILE: MSMg01no470_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:46 2005
         (176 letters)



>mm_chr9_77635971_77636546
          Length = 576

 Score =  333 bits (172), Expect = 5e-96
 Identities = 175/176 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttacgtagagtccttttactcatcaggataaattgtctctacttgaactctgattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttacgtagagtccttttactcatcaggataaattgtctctacttgaactctgattttc 260

                                                                       
Query: 61  cttgcaagcctaaatctaaggttttgtttaaaaataatggtgaggtggtcccacaaacta 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcaagcctaaatttaaggttttgtttaaaaataatggtgaggtggtcccacaaacta 320

                                                                   
Query: 121 gagccatctccctgatattcccattggtctacaatgtcaaaattaggcttgctggt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccatctccctgatattcccattggtctacaatgtcaaaattaggcttgctggt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)