Query= MSMg01no471_f16.b1 MSMg01no471_f16.b1 CHROMAT_FILE:
MSMg01no471_f16.b1 PHD_FILE: MSMg01no471_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:34 2005
(424 letters)
>mm_chr9_49307523_49308346
Length = 824
Score = 687 bits (355), Expect = 0.0
Identities = 400/417 (95%), Gaps = 6/417 (1%)
Strand = Plus / Plus
Query: 5 gaattctctattt---catggtgtaagcaatttctatacagtattttcataccacactct 61
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcta--tcaacatggtgtaagcaatttctatacagtattttcataccacactct 262
Query: 62 ttatatcagcaaaactgataataaacatataaacataccctcctacccagatctgttctc 121
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 263 ttatatcagcaaaactgataataaacata-aaacatacactcctacccagatctgttctc 321
Query: 122 actatttgtgggcctgttgccacacacttctgcttatatttcaccaagcaaagtaagtca 181
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 322 attatttgtgggcctgttgccacacacttctgcttatatttcaccaaacaaagtaagtca 381
Query: 182 cacagtcatacctgttgaagtgagcagagaagtacaaggtcaccatgtgcctgaaagaaa 241
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 catagtcatacctgttgaagtgagcagagaagtacaaggccaccatgtgcctgaaagaaa 441
Query: 242 agtagagtgatagtgtatgtaattctgataacccctccattatatatgtattctgacaac 301
|||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||
Sbjct: 442 agtagagtgatagtgtatgtaattctgacaaccactccattatgtgtgtattctgacaac 501
Query: 302 cactccattatgtgtgtgggcatgtgtgtgaatgtgtgtgtggtatgtgtgtgcatgtgt 361
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cattccgttatgtgtgtgggcatgtgtgtgaatgtgtgtgtggtatgtgtgtgcatgtgt 561
Query: 362 atgtgttaatgtgtggtgtgtatgtgcatgtgtgtatgaatgtgtggtgtgtatgta 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgtgttaatgtgtggtgtgtatgtgcatgtgtgtatgaatgtgtggtgtgtatgta 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_f16.g1 MSMg01no471_f16.g1 CHROMAT_FILE:
MSMg01no471_f16.g1 PHD_FILE: MSMg01no471_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:34 2005
(579 letters)
>mm_chr9_49462100_49463078
Length = 979
Score = 1081 bits (559), Expect = 0.0
Identities = 574/579 (99%)
Strand = Plus / Minus
Query: 1 tgctgggccattaacaccccttggctgacagaatccacaggctgcttgaagagtagactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgctgggccattaacaccccttggctgacagaatccacaggctgcttgaagagtagactc 720
Query: 61 atttgggaatatttcgaagcttccttgggatcatcacaggacacctacatattgatgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atttgggaatatttcgaagcttccttgggatcatcacaggacacctacatattgatgttc 660
Query: 121 ttatgcttagctctgactcactgaggatggagttagcatcctgtggagatgaagctaagc 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttatgcttagctctgactcattgaggatggagttagcatcctgtggagatgaagctaagc 600
Query: 181 ccgggcgctgtgtattagttggaatcaatgaaggaagcaaaccccaactgtaccagtgag 240
|| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 599 ccaggcactgtgtattagatggaatcaatgaaggaagcgaaccccaactgtaccagtgag 540
Query: 241 acagaaaattcaccccaaggagagtttccacagagagtggtgatgaccctgtccagaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acagaaaattcaccccaaggagagtttccacagagagtggtgatgaccctgtccagaaag 480
Query: 301 gagactggggagcaagcatagttgactgtggacttcaaagtatgaccctggaggctgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gagactggggagcaagcatagttgactgtggacttcaaagtatgaccctggaggctgctc 420
Query: 361 actgttttactggggtttctgagtttcatgattcccataccctgacatctctcagaggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 actgttttactggggtttctgagtttcatgattcccataccctgacatctctcagaggga 360
Query: 421 caaatccttatctaggaaggaattcaagtagaacactaaaggtagaaacagaagcaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 caaatccttatctaggaaggaattcaagtagaacactaaaggtagaaacagaagcaagga 300
Query: 481 ggataggagacagtggctttcaaagatttttcacattttctgtcagcacagacctattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggataggagacagtggctttcaaagatttttcacattttctgtcagcacagacctattaa 240
Query: 541 gaagacctatttggggaaacacagtaattgtttgggtgt 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gaagacctatttggggaaacacagtaattgtttgggtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
