BAC Information

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BAC

Clone NameMSMg01-471K04
Chromosome9 (Build37)
Map Location 108,119,142 - 108,119,658
singlet/doubletsinglet
Overlap geneDag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471K04.T7 (MSMg01no471_k04.b1)MSMg01-471K04.TJ (MSMg01no471_k04.g1)
ACCAG554357AG554358
length732738
length of high quality
(start - end)		523 (51 - 573)528 (83 - 610)
definitionCHROMAT_FILE: MSMg01no471_k04.b1 PHD_FILE: MSMg01no471_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:57 2005CHROMAT_FILE: MSMg01no471_k04.g1 PHD_FILE: MSMg01no471_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTTTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXTATCCGAGAGGA
TCCGCGGAATTCTATAGTTCCTATCATTTTCGATCTCTCTGTCTCTGTTG
TTGTTGTTTGTTTTTGAGACAGGGTCTCACCATGTAGCTCTGGCTGTCCT
GGAAGTTGCTTTGTAGACCTGGCTGGCCTTGAACTCGAGATTCCCTTGCT
TCTGCCTCCTGATGGCTGGGATTAAAGACATGCACCGCTAGCACCAGCCC
ATAGAACTTTTCTACTCCAGCAGGCAGATGCTAATCTATTAGTTAAAGAT
TGGTAGCTCGAAGGATATATTGCTTGCCTGATTTTATATGACCCTTTGAG
TGTCCTGACTCTGCATTGGTTGCTTTTGTTCCAGTGGTTATTGGAATGTT
TTACATGGGTTAATTTTGACCAGAAGTATCTTGAATTGATACAGTGACTT
AGATATTTATAGTATCTGGCAGAGACATGTAATGAATGGGCTTACCAGGA
GCATAAAGAGCTTTTACTGGGAAAACAGGATTTATCTGAACATATTTATC
TGTGGAGAAGAAACAGTTTAGTAGCTGATGAGCCTTTGGGAGAGCAGATG
AAGTACTGGGGTTCAGCATCAGAGGGCTTGCCCAGCACACTGGACTAAGA
TTCCATTCTGTAGCCACCCTGCTCCTCAGACCCAGGGCTGTGTGAACTGA
GGGTTTGGATAGTAATGCATGACCTGACTCTG

TTTTACCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTG
GCCTCGAACTCAGAAATCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCGTGTGCCACCATGCCCAGCCCAGCTGCTTTTTTTAACTGAAGAATT
TATTTGTGTGTCTATGTGTAAGTAAATATATATGCATACCAGAAGGGAGC
ATTAAATTCCTCTGAACAGATAGCTGTTTGTGGGATACCAGGCCTGTTAT
ATGGGTGTTGACATTTGAACTCTGATCCTCCTGATTACATAGTAAGCACT
ATTAATTGCTGAGCCATCTCTCCAGCCCTTGTAAAATTGTTTAGAACCAA
GCTGGAGAGATGACTCCGTGAATAAGAGCATATGCTGTTCTTGTAGAGAC
CCAGGTTTGGTTCCCAGCACCCACATGACAGCTCACAACTCTCTGTAACT
CCAGTTCTAGGGGATTCACTTTCATTCAGGTGTGGAGTGCACACATAGTC
AAAATTCTCATGCACATAAAATAAAAATGAGTAAGCCTTTTAAAATTATT
TTTTAAATTTAGTTACGATTTTAGTCATGTTAACATTTTTACTTAGGGGA
ATTTCCATTTAGCAATCCCAGTTAGAGCTGACTTTAATTTTTTTTTAAGA
CTTATTTATTTATTTGTAATGTATTCAGCGTTCAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_k04.b1 MSMg01no471_k04.b1 CHROMAT_FILE:
MSMg01no471_k04.b1 PHD_FILE: MSMg01no471_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:57 2005
         (523 letters)



>mm_chr9_108118752_108119674
          Length = 923

 Score =  862 bits (446), Expect = 0.0
 Identities = 500/520 (96%), Gaps = 6/520 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctatagttc-ctatcattttcgatctctctgtctctgttgttgttgtttgttttt 65
           ||||||||||| ||  ||||| ||||||||||||||||||   |||||||||||||||||
Sbjct: 907 gaattctatagatcaatatcagtttcgatctctctgtctc---tgttgttgtttgttttt 851

                                                                       
Query: 66  gagacagggtctcaccatgtagctctggctgtcctggaagttgctttgtagacctggctg 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 850 gagacagggtctcaccatgtagctctggctgtcctggaagttgctttgtagaccaggctg 791

                                                                       
Query: 126 gccttgaactc--gagattcccttgcttctgcctcctgatggctgggattaaagacatgc 183
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 790 gccttgaactcgagagattcccttgcttctgcctcctgatggctgggattaaagacgtgc 731

                                                                       
Query: 184 accgctagcaccagcccatagaacttttctactccagcaggcagatgctaatctattagt 243
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 730 accgccagcaccagcccatagaactcttctactccagcaggcagatgctaatctattagt 671

                                                                       
Query: 244 taaagattggtagctcgaaggatatattgcttgcctgattttatatgaccctttgagtgt 303
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 taaagactggtagctcgaaggatatgttgcttgcctgattttatatgaccctttgagtgt 611

                                                                       
Query: 304 cctgactctgcattggttgcttttgttccagtggttattggaatgttttacatgggttaa 363
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 610 cctgactctgcattggttgcctttgttccggtggttattggaatgttttacatgggttaa 551

                                                                       
Query: 364 ttttgaccagaagtatcttgaattgatacagtgacttagatatttatagtatctggcaga 423
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 550 ttttgaccagaagtatcttgaattgatacagtgacttagatatttgtagtatctggcaga 491

                                                                       
Query: 424 gacatgtaatgaatgggcttaccaggagcataaagagcttttactgggaaaacaggattt 483
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gacatataatgaatgggcttaccaggagcataaagagcttttactgggaaaacaggattt 431

                                                   
Query: 484 atctgaacatatttatctgtggagaagaaacagtttagta 523
           |||||||||||||||||||||||||| |||||||||||||
Sbjct: 430 atctgaacatatttatctgtggagaacaaacagtttagta 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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