CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCAGTGTGTTTTTACAAACACAAAAATAAAAATTGTGGCTAGGTCGA
CACTAAGAGACGATTATTATCGACTTTAACTTAACACGACTCCATAATCT
AACAGGAAAAGTTAAATCTAAAATGCATTAGATATATATACTAAGTATTT
GATAAATGGATTTTTGCCAAATAATTTATTTAAATATTCTCTAAAGCAAC
AATGACAACCTGCAATGGGGTTTTTGTTTTGAAAATAGTATGTTGAATAT
CAGAGTGAGGATGTGTACTGCTGGTTCATGCTCTAATATTCTGGAGTAAA
TGACAAAGCATTTACTCAGAGAGAACATTTTTTTTTATTACAAAGATATT
CTACTGAGACAATATATAAGTGATACTATTGAACAACTTCATGAAGTATT
AGAGAACAGAAGTATATACTCTATGGTTTGTGTTTCAAGGGTATTGTCTA
AGAGAAATCTCACTAGTCAAAAATTGTACATATTATCTTTAAAAATGGTC
AAACAAGTACAAAGGGAAGAAAATAGCATGGATTTCATTTGGATTTTAGA
AAGATGTCTGTACCTTTAGGGAAAGAAAGAATAAGAAGAAGTATAATATA
TATTGGAGCATTTTATAGATTAAAACCTTATTATTTTTCCTAATAAGGGA
ATGTTCAATGTGTCACACCCTCCCCAAATTGTAAATTTATTCCTATTTTC
TCGGTTCTAATTTAGAAATAAAAATCTTCTT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTATTCTAGTAAAGTAATAGTG
GAAGCTCTCCTCTAAGATCTATGCCCTCTCATGTCTCAGGAAGTTGGCTA
GTATTAGGAATTATATTCTCTGGTAAGTGGACTTTAAGTCCGATTGGGCA
ACTGTTACTTCCTACTAATATATGAGTGCTACCAAAGAACTTTTATCTGT
TTGTGTTTGTCTGTCTGTTTCTGCCTCTCTCTGCCTCTCTCTGTCTCTCT
GTCTCTTTCTGTATCTCTCTCTCTCTCTTTGTGTCTCTTTGGCTCTCTGG
TTCTCTGGCTCTGTCACTCTGTCTCTTTGTGTCTCTGTCTGTGTCTGTCT
CTCTGTGTGTGTGTTGTTGTTGTTGTTTTGNTGNATGCGNTATGANNCCT
GTNCTTNCTGCCCCTTGTGTTTCGTTTCTCCCCGCTCCTCTCTCTGTTCC
CCTCCTGTCTCCGTCTTTTTGCCTCGTTGTTTTTTTCCTCCCTCGCGCCT
CCCTGTTTCCGTTTTGTCCCCTGCTTTTTCTTTCCGTGGTGTTCTTTCTT
CTTCCCCTTTTTTTCCTTTCTCTTTGCCGTTTTTCCGTTCTTTTCTTTCT
TTGTTTTCTGCCTGTTCTTTTTTTTTTCTTTTTTTTTTTTTCCTCGTCCC
TTTTTTCTCTGTCTTTCCTTTTCCTTCTCTTTCTTCTCTTCCCTCTCTGC
TGTTCCTCCCTTTTTTTTCCCTCTCTTCTCCCCTTTTTTTTTCTCTTCTC
TT

Query= MSMg01no473_i10.b1 MSMg01no473_i10.b1 CHROMAT_FILE:
MSMg01no473_i10.b1 PHD_FILE: MSMg01no473_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:38 2005
         (556 letters)



>mm_chr9_11325462_11326416
          Length = 955

 Score =  949 bits (491), Expect = 0.0
 Identities = 538/555 (96%), Gaps = 5/555 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgtgtttt--tacaaacacaaaaataaaaattgtggctaggtcgacactaa 61
           |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ggaattcagtgtgttttgata-aaacacaaaaataaaaattgtggctaggtcgacactaa 697

                                                                       
Query: 62  gagacgattattatcgactttaacttaacacgactccataatctaacaggaaaagttaaa 121
           ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 696 gagacgattattgccgactttaacttaacatgactccataatctaacaggaaaagttaaa 637

                                                                       
Query: 122 tctaaaatgcattagatatatatactaagtatttgataaatggatttttgccaaataatt 181
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tctaaagtgcattagatatatatactaagtatttgataaatggatttttgccaaataatt 577

                                                                       
Query: 182 tatttaaatattctctaaagcaacaatgacaacctgcaatggggtttttgttttgaaaat 241
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 tatttaaatattctctaaagcaacaatgacaacctgcaatggggttcttgttttgaaaat 517

                                                                       
Query: 242 agtatgttgaatatcagagtgaggatgtgtactgctggttcatgctctaatattctggag 301
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 516 aatatgttgaatatcagagtggggatgtgtactgctggttcatgctctaatattctgaag 457

                                                                       
Query: 302 taaatgacaaagcatttactcagagagaacatttttttttattacaaagatattctactg 361
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 456 taaatgacaaagcatttactcagagagaaca--tttttttattacaaagatattctactg 399

                                                                       
Query: 362 agacaatatataagtgatactattgaacaacttcatgaagtattagagaacagaagtata 421
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 398 agacaatatataagtgatactattgaacaacttcacgaagtattagagaatagaagtata 339

                                                                       
Query: 422 tactctatggtttgtgtttcaagggtattgtctaagagaaatctcactagtcaaaaattg 481
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 338 tactctatggtttgtgtttcaagggtattgtctaagagaaatctgactagtcaaaaattg 279

                                                                       
Query: 482 tacatattatctttaaaaatggtcaaacaagtacaaagggaagaaaatagcatggatttc 541
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 278 tacatattatctttaaaaatggtaaaacaagtacaaagggaagaaaatagcatggatttc 219

                          
Query: 542 atttggattttagaa 556
           |||||||||||||||
Sbjct: 218 atttggattttagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space:   515970
Effective search space used:   515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)