BAC Information

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BAC

Clone NameMSMg01-473K18
Chromosome9 (Build37)
Map Location 30,267,569 - 30,267,842
singlet/doubletsinglet
Overlap geneSnx19
Upstream geneHnt
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473K18.T7 (MSMg01no473_k18.b1)MSMg01-473K18.TJ (MSMg01no473_k18.g1)
ACCAG555916AG555917
length785769
length of high quality
(start - end)
274 (54 - 327)504 (76 - 579)
definitionCHROMAT_FILE: MSMg01no473_k18.b1 PHD_FILE: MSMg01no473_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:51 2005CHROMAT_FILE: MSMg01no473_k18.g1 PHD_FILE: MSMg01no473_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCCAACTCTTTCTCGCAACCTCTGCATCCATGTAACCTTTCCTC
ATATAAGAGAGCGCCTGGGTACCTCAGGCATCTTCTGGGTACCTATCAGA
AGACAGGAGTTAGATATGTTTGGGTCTATAGTAATTTATCCAGTGAGGAT
AGGACCTCATACTTCACTATGGCAAGGATGTCCTCTTTGCTCTCTTCCAC
ATGGATTTAACATGTTCATGCACAGATGTGGGGTGCAAACAACTTTTAGT
GTGTAACACAGCATGAGCACATACAAGTCTGACTACAATTCTTTAAATCC
AAGGAATGCAGGGAAGAAGAACCAAAGTCCAAAACGGTAAAACTCAGCTC
GTGGTGAGTTGGGAAGCTAAACATGGCGAGACAAAGCAGAGGAACTGTCA
GTGGGGACTGGAACCTCCAAGCTAGTGAAGTGGAGTCACTGGGATGCAGG
GCAAAGTTTGAGCACAGAGCTGGTTAGATGGAGGCCCCAAGTCAAGCCCA
GGAATGTCTGAAGCAAGCCTGTGGCAAACTGGCAGAAACAGAAAAATTCC
GGTCTACCAAGGGGAGGAGGCCCTAGAGCAGATTTCCCAGGTTGGATGGG
ATCACATGTTGATTTAATACCTTGTTTTTTTCCCGAATTATTCTCCTTGA
ATAATTTTTTTCCCGCAGTTTCTGCCTTTTTGGACAAAGGAATACTTCTT
CCCTTTCCTAAGAAAAACCTCCTCTATTGCTCTCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCACTTGTTGCAGTCTGTCCTCCA
GTCTATGTTGAAAGCCAGAAGAAGCTGCTTCAAACAACAATGAAGGAATG
CATCAGCAGCAGGATAGATAAACTTGCCATCAAGAATGAAGACAAACAGG
CAAAAAGCAAAGTATTCTCCTTCCATGCCCTTTTATCCATTTTGCAGTCA
GAGGGTGCCACTCACATTTGGAGTAGATTGTTCCACTTCAAATAAATCTG
TTCAAACTGGACCTCACAAGATCGAACCAGGGCTCAACTAAAACTTCAGC
CCTACTGACTAGCTTTCCTAATGCTGGATGGTAGTAGAGTATACATGGTA
CCAGAGGAGAAAAGTGAGCATCATTCTCACCCAGCTATAAGCCCTGCAGC
CTACAACAGAGGCCTGGCCTACATAGTAGACTGTTGCAATAGTGGTACAA
ATGTTGGAGAATCACCAACCACTTTTTGCTTGAAGATAAGACCTGCTCCA
TGAGGGCAGTGGTGGTGCATGCCTTTGATCTCAGCATTTGGGAGGCAGGT
GGATTTCTGAGTACGAGGCCAGCCTCGTCTACAGAGTGAGTTCCAGGACA
ACCAGCGCTACACAGAGAAAACCCTGTCTTCAAATCAACTATCATACCAA
CTTTCAACCCATCCACCTTACACCATTGTTCTCTGGGTTGGCGAACCACT
AATGATGGTGTTTCTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_k18.b1 MSMg01no473_k18.b1 CHROMAT_FILE:
MSMg01no473_k18.b1 PHD_FILE: MSMg01no473_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:51 2005
         (274 letters)



>mm_chr9_30267369_30268042
          Length = 674

 Score =  499 bits (258), Expect = e-146
 Identities = 271/276 (98%), Gaps = 4/276 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccaactctttctc--gcaacctctgcatccatgtaacctttcctcatataagagag 58
           ||||||||||| ||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aattccaactc-ttc-caagcaacctctgcatccatgtaacctttcctcatataagagag 417

                                                                       
Query: 59  cgcctgggtacctcaggcatcttctgggtacctatcagaagacaggagttagatatgttt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cgcctgggtacctcaggcatcttctgggtacctatcagaagacaggagttagatatgttt 357

                                                                       
Query: 119 gggtctatagtaatttatccagtgaggataggacctcatacttcactatggcaaggatgt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggtctatagtaatttatccagtgaggataggacctcatacttcactatggcaaggatgt 297

                                                                       
Query: 179 cctctttgctctcttccacatggatttaacatgttcatgcacagatgtggggtgcaaaca 238
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 296 cctctttgctctcttccacatggatttagcatgttcatgcacagatgtggggtgcaaaca 237

                                               
Query: 239 acttttagtgtgtaacacagcatgagcacatacaag 274
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 acttttagtgtgtaacacagcatgagcacatacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)