Query= MSMg01no474_e08.b1 MSMg01no474_e08.b1 CHROMAT_FILE:
MSMg01no474_e08.b1 PHD_FILE: MSMg01no474_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:39 2005
(474 letters)
>mm_chr9_95328967_95329840
Length = 874
Score = 791 bits (409), Expect = 0.0
Identities = 454/479 (94%), Gaps = 18/479 (3%)
Strand = Plus / Plus
Query: 1 agccagcgtccggactccttcagaagtttctagatgaacgactgagcttataagggaaga 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccagcgtccggactccttcagcagtttctagatgaacgactgagcttataagggaaga 260
Query: 61 tgtgtcttattcttgtgtgagcctctcaaatcttcactcatctgccttctgcattcatcc 120
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 261 tgtgtcttattcttgtgtgagcctctcagatcttcactcgtctgccttctgcattcatcc 320
Query: 121 tctgcttccatgtatagccactacttgccgtactgtgtgtttgatatttgctttcatctg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tctgcttccatgtatagccactacttgccttactgtgtgtttgatatttgctttcatctg 380
Query: 181 attcactggccaggacgtaaccttagttgatttagaataaaaactctatatcaccactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --------gccaggacgtaaccttagttgatttagaataaaaactctatatcaccactat 432
Query: 241 caatgttttt-----ctgttactatgttacaaaaataaatgtaactgaaacacaggtata 295
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caatg-----agaaactgttactatgttacaaaaataaatgtaactgaaacacaggtata 487
Query: 296 ggaaagacaaagggaagtcattgaattctggttcgcctcactggctttccttgctttgtt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggaaagacaaagggaagtcattgaattctggttcgcctcactggctttccttgctttgtt 547
Query: 356 ttgcatttaaaggtcacggacactagctattagacagcgacaaaaacacttacttgttca 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgcatttaaaggtcacggacactagctattagacagcgacaaaaacacttacttgttcc 607
Query: 416 caggctaaactgagaatcatatctcacacttacgaaaactgtctcatggaccttgacta 474
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 608 caggctaaactgagaatcatatctcacacttacaaaaactgtctcatggacctcgacta 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_e08.g1 MSMg01no474_e08.g1 CHROMAT_FILE:
MSMg01no474_e08.g1 PHD_FILE: MSMg01no474_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:40 2005
(398 letters)
>mm_chr9_95510234_95511030
Length = 797
Score = 673 bits (348), Expect = 0.0
Identities = 387/400 (96%), Gaps = 5/400 (1%)
Strand = Plus / Minus
Query: 1 atggggatccccagtgtattaggaaaacatgcttagtctttggttggtagtagaac-aaa 59
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 597 atggggatccccagtgtattagggaaacatgcttagtctttggttggtagtagaacaaaa 538
Query: 60 aaagagataaagagacaaaagataaaaagttatggttcttggagttgggattcagaaatg 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaagagataaagagacagaagataaaaagttatggttcttggagttgggattcagaaatg 478
Query: 120 cagacaaactctgccatgttgcctgatagaagcattgtaagcagctgtaccaaaggagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cagacaaactctgccatgttgcctgatagaagcattgtaagcagctgtaccaaaggagag 418
Query: 180 atttctcttaagtaaagtacattattaaggggatatttagttctccctttcttaggctgt 239
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 417 ctttctcttaagtaaagtacgttattaagggg-tatttagttctccctttcttaggctgt 359
Query: 240 cgttgtgttggacctgctttcctggaggggtagattcttggcaggtgaatggcaggccga 299
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccttgggt-ggacctgctttcctggaggggtagattcttggcaggtgaatggcaggccga 300
Query: 300 tgtggattaattcttcaacagaagagacaaccgtgtatgtgatggctagttttcattatc 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 299 tgtggattaattcttcaacagaagagaccaccgtgtatgtgatggctagttttcattatc 240
Query: 360 tacacaataatgtgga-agagactctcagcgagggctagt 398
|||||||||||||| | |||||||||||| ||||||||||
Sbjct: 239 tacacaataatgtg-atagagactctcagtgagggctagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 797
Length adjustment: 9
Effective length of query: 389
Effective length of database: 788
Effective search space: 306532
Effective search space used: 306532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
