BAC Information

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BAC

Clone NameMSMg01-474K09
Chromosome9 (Build37)
Map Location 69,587,722 - 69,587,961
singlet/doubletsinglet
Overlap genenone
Upstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
Downstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474K09.T7 (MSMg01no474_k09.b1)MSMg01-474K09.TJ (MSMg01no474_k09.g1)
ACCAG556662AG556663
length719711
length of high quality
(start - end)
241 (75 - 315)186 (119 - 304)
definitionCHROMAT_FILE: MSMg01no474_k09.b1 PHD_FILE: MSMg01no474_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:10 2005CHROMAT_FILE: MSMg01no474_k09.g1 PHD_FILE: MSMg01no474_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAACAGACACCG
CGGAATTCTCTGCTTTTCCAAAATTCTTTTCTATCCTTGTATTTCAGCCT
CTCTTCTTTGATCAAAAAATCGAAGCCCCGAGTTGAGTATTTAGGATCTC
CTTGTACCTGCTTCTGGTGGTCTAAGCACTCTGGGAAATCCTCCCAGCCC
AGCTCCACGGGGAACAGGCTAGTCCCCTGAAGTGTTTCCCTCTGGCTTGT
TAACACATTCCCACCTTTAGACTACAGAGTGCAACTTTCTTCCCCAGGAA
CTACTGGAGAGCAATTCTCCTGTGATGTCAGCCACCTTCGTGTCTCACAA
GTAGCTATAGCTCAGTAAACAACTGAAATGTATTGGTAATACCAGCATCA
GAGTATCCTGGAGATAAATCAGTTGGCTCCACCCCTCTGTCATGGCATTA
TGCAAATGAGATTTCTAAGAGGCCTTGAGACTATGTCATGTTTCCCCAAT
CCCTCTCCCTAGGATCTGTGCTCAGTGTCAGGAATGCAGGATTCTTGGTG
TGTGCGCATCGCGTAGATGAGTGGGTAGTCAGGTCTCAGTCAGGCTCTGC
AGTTAGTTCTCTCCTTTCTNCCTTCTTGTGAGTTTGGGGAATTGTTTTTT
GGTCATTATGCTTTGAACGATTAATGTCTTTACCTTGCTGAATCCTCTCC
ACCAGCCTTTTTATTTGTT
CCATGCAGTGGTAGCCTGGGGGCGCCTGTTTCAAAACTGAGGNGAACTAT
AGAAGTTTCGCAAACATCCTACTTAAAGGCTGGAGGTAGGTGTTGCAGTA
ATTTCTTACCTCAACACGCTTGTATAAAAACCACACAACTCAGTTATTCA
TAAACTGCCTTAGTCAGGGTTTCTACTACTGCACAAAACATCAGGACTAG
GAAGCAAGTTGGGGAGTAAAGGATTTACTCAGCTTTCACTTTCTTATTGC
TGTTCATCACCAAAGGAAGTCAGGACAAGAGCTCACATAAGGCAGGAACC
TGGAGGTTGATCCGATGCAGAGGCCATGGCAGGGTGCTGCTTACTGGACT
GCTTCCCCTGGCTTGCTCGATTTGCTTTCTTATAGAACCCAGGACTACCA
GCCCAGGCATGGCACCACCCACAATGAGCCCTCCCCTCTTGATCACTAAT
TGAGAAAATGCCTTACAGCTGGATCTCATGGAAGCATTTTCTCAACGGAG
GCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAAT
TAGCCAGTACATAAGCTATATGCATAGGGCTCGGAATATCTATCACTATA
CTAATTGATTGCCCAGCTATGATTGCCTCTTGCTATTTTTTTCTTTCCCC
AGCCCTGCTGGTTCCGCTCCATCTTTCTCCCCCCTTCCTCTTCCTCTGGC
TCTCTTCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_k09.b1 MSMg01no474_k09.b1 CHROMAT_FILE:
MSMg01no474_k09.b1 PHD_FILE: MSMg01no474_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:10 2005
         (241 letters)



>mm_chr9_69587522_69588162
          Length = 641

 Score =  418 bits (216), Expect = e-121
 Identities = 234/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttctatccttgtatttcagcctctcttctttgatcaaaaaatcgaagccccgagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcttttctatccttgtatttcagcctctcttctttgatcaaaaaatcgaagccccgagtt 381

                                                                       
Query: 61  gagtatttaggatctccttgtacctgcttctggtggtctaagcactctgggaaatcctcc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 gagtatttaggatctccttgtacctgcttctggtggactaagcactctgggaaatcctcc 321

                                                                       
Query: 121 cagcccagctccacggggaacaggctagtcccctgaagtgtttccctctggcttgttaac 180
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||
Sbjct: 320 cagcccagctccacggggaacagactagtcccctgaagtgtttccctctggcttgggaac 261

                                                                       
Query: 181 acattcccacctttagactacagagtgcaactttcttccccaggaactactggagagcaa 240
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 260 acattcccacctttagactacagagtgtaactttcttcaccaggaactactggagagcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)