Query= MSMg01no476_k04.b1 MSMg01no476_k04.b1 CHROMAT_FILE:
MSMg01no476_k04.b1 PHD_FILE: MSMg01no476_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:48 2005
(450 letters)
>mm_chr9_26364508_26365357
Length = 850
Score = 839 bits (434), Expect = 0.0
Identities = 446/450 (99%)
Strand = Plus / Minus
Query: 1 ctttgaattgtaagaatcttcaagaaaacactaaaggtccctgaggcttgataaagtgct 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 650 ctttgaattgtaagaatcttcaagaaaacactaaaggtccctgaggtttgatgaagtgct 591
Query: 61 ttggggaaaaagagtcactgggaactctgtgaagtcagctctctttagcactgatctgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttggggaaaaagagtcactgggaactctgtgaagtcagctctctttagcactgatctgac 531
Query: 121 ttggacatctatcagggatgcccattgttccagagcattttcttgttctcctgagaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttggacatctatcagggatgcccattgttccagagcattttcttgttctcctgagaggag 471
Query: 181 gaatatttggagggtgttggcctgaagcctgaatcaaaagtgctgaaatcaaaagccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaatatttggagggtgttggcctgaagcctgaatcaaaagtgctgaaatcaaaagccctt 411
Query: 241 tctccagggatgtggtagtctatgggttttgcagatgaggtatcatttaatttctcttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tctccagggatgtggtagtctatgggttttgcagatgaggtatcatttaatttctcttaa 351
Query: 301 gacaaattttaggaagatgttcttagcccagtcagtagctggacttacttttctcaagga 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gacaaattttaggaagctgttcttagcccagtcagtagctggacttacttttctcaagga 291
Query: 361 ttgctttgcagatcatggctggggcatcctaaatgacatcccatgtagttctgtcaccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttgctttgcagatcatggctggggcatcctaaatgacatcccatgtagttctgtcaccct 231
Query: 421 tcaggcttagccatccttcctacagggctg 450
||| ||||||||||||||||||||||||||
Sbjct: 230 tcatgcttagccatccttcctacagggctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_k04.g1 MSMg01no476_k04.g1 CHROMAT_FILE:
MSMg01no476_k04.g1 PHD_FILE: MSMg01no476_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:48 2005
(502 letters)
>mm_chr9_26187125_26188028
Length = 904
Score = 808 bits (418), Expect = 0.0
Identities = 485/520 (93%), Gaps = 24/520 (4%)
Strand = Plus / Plus
Query: 1 acagccactcattacaatcctatgcctccaatatcatgatccctaaaagggaaattcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagccactcattacaatcctatgcctccaatatcatgatccctaaaagggaaattcctt 260
Query: 61 ctcctactccttggaatcaactctttttttaactaatattcagcctagatttcacctgtt 120
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctacttcttggaatcaactccttttttaactaatattcagcctagatttcacctgtt 320
Query: 121 ggtaaggttgttcctgatccagatagtctgttttgctggattcttagacactcaagttag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ggtaaggttgttcctgatccagatagtctgttttgctgtattcttagacactcaagttag 380
Query: 181 accctccatcacagtaccctatcccaggatgggccacaccccttgacttatttacatgac 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 accctccatcacagtaccctatcccaggatgggcaacaccccttgacttatttacatgac 440
Query: 241 agtca------tttttttgatacataaactcaagatataactggagaaatgttggtcaaa 294
||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcacagcaat------gatacataaactcaagatataactggagaaatgttggtcaaa 494
Query: 295 tgaata--gactctcttcaaagactgagggtctcttttcatcctctagaatctttttctc 352
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgaataaagactctcttcaaagactgagggtctcttttcatcctctagaatctttttctc 554
Query: 353 ctacatctatagcttacactctctttcacaaatctaccctaacaggaatttcccaggagg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 ctacatctatagcttacactctctttcacaaatctaccctaacaggaatttccgaggagg 614
Query: 413 gatttaaagactggacttttccgccctttctttttctttttctttctctctttatttttt 472
||||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 615 gatttaaagacaagacttttctgccctttctttttctttttctttctttctttctttttt 674
Query: 473 ttt---------acttttttaaatttatttttt-aattag 502
||| |||||||| |||||||||||| ||||||
Sbjct: 675 ttttttttttttactttttttaatttatttttttaattag 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 904
Length adjustment: 10
Effective length of query: 492
Effective length of database: 894
Effective search space: 439848
Effective search space used: 439848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
