BAC Information

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BAC

Clone NameMSMg01-476N09
Chromosome9 (Build37)
Map Location 10,053,098 - 10,249,333
singlet/doubletdoublet
Overlap geneCntn5
Upstream gene9030420J04Rik
Downstream geneLOC665154, LOC100039970, LOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476N09.T7 (MSMg01no476_n09.b1)MSMg01-476N09.TJ (MSMg01no476_n09.g1)
ACCAG558331AG558332
length784776
length of high quality
(start - end)
246 (69 - 314)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no476_n09.b1 PHD_FILE: MSMg01no476_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:04 2005CHROMAT_FILE: MSMg01no476_n09.g1 PHD_FILE: MSMg01no476_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,249,089 - 10,249,333)(10,053,098 - 10,053,339)
sequence
TCTATAATTGCGGCGCTAAACGACTCACTATTCGAACACCATCCGCGGAA
TCTCTATTTCCAGACCCTTCTATACAATAAATTTATGTGAAGAATGTATA
CAAATACTAACTAGCAGCGAATGATATATCTCAACTGAGATGGTGCTTAT
AAGTAGACAGCCATCATAGGCAGAAATTTCATTTAGAAATGTTTCTTGTA
GCAGTATCTAATACAACTGGCTGGACAAAGATGAATTAATTTACAATTTA
CACCTAAAATCATAAATCAAAGCAGAAAAATTTATTAGAGAAAATCATCA
TAATAACTCAAAATTACTCNCTGCAATTCCAAGTTAAATTCAGGTAGGTA
TTAAAGTCTCCTACTTTAATGTATTCTTAAAAATAATTTAATCAATCTCA
ATTTACTACTCATTCACATATAATACCATCATAGAGAACCCAAGGGCCAA
GTGGAGCCAAAATAGGAGTACCGAAACAAGAGCTGTCTTCTAGTTGAAGC
GTGTGTGCGTGTGTGTGTGTGTTCCCTCTTTTCCCCCTTTTCTTTCCCCC
CCTCCTTTTTTCCCTTCTTTCTTCTTTCTTTCCTCTCCCCCCTTTTTTTC
CTCCCCTCCTTCCTTTCCTTTTCCCTTCTCCCCTTTCCCCTCCTTTATAC
CTTTTTTTTCCCTTTTCTTTCCCTACCCCTTCCTTCCTTATCCCTCCCCC
TTCTTTTTTCCCTTTTTCCCCTCCCTTCTCTCTTTCCCTCTTCCTTCTCT
TTCTCTTTCCCCCCTACCCCCTTTACCCCTTCCN
CATTGCAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCTCTGCGAAATTCCAGGGCTCAAAAATACTAATCCTAT
TTCTGCAGTTAAGTTTTCTTTTTTTTCACATAGCCAAGAGGTTCACAAAG
CCAAGGACAAGAAGGAGAACACTGTACAATAACTCAGCTGACACCTGAAA
CTGGGTTAGATTTCCTGCCTGTACCCAAAATAGAAATATTGAGTGGAGTC
TAACAACATTTAAGATCTTTGTTTACATTCTCTGTTAAGGCTTTTATTAT
CTATTAACATTTATTAAAATCTTCTTCAAACTTTACTTTCATAATAAAGA
GGAATACAGTTACTTTAAGGATAATGCTATAGTGCGAGGACTATAAAATA
ATTTGGGGAGACTAGAAAATATAATTGTCTATATAAGACTATGACTTTAG
TCTTTATTTTGTGTGCTACTTTGTTATTTATTAACTATGACTCGATCTTT
ACAATACCCACATATGCATTGATTTATTAACTAGCCATATTTTGATATCT
TATTTAATCTCCCACCATATTTGATACTACCCGTTTTACGCCGATCTTCC
CTTTTCTTCAATGTACTTTCATATTTTCGTCTTTAACCCCCCCCCCTCTT
TACCCCCCCCTCCCCTTCTTTTATCCCCCCTTCCCCACCCTTTCTTGACC
CCTCCGATCTCTTCGCCCTCCCCTTCCCCCTTTCTTTTCTCCCCCGCCCC
CCCCCCTTTTTTCTTCTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_n09.b1 MSMg01no476_n09.b1 CHROMAT_FILE:
MSMg01no476_n09.b1 PHD_FILE: MSMg01no476_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:04 2005
         (246 letters)



>mm_chr9_10248889_10249535
          Length = 647

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatac-aataaatttatgtgaagaatgtatacaaatactaactagcagcgaatgatat 59
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 tctatacaaataaatttatgtgaagaatgtatacaaatactaactagcagggaatgatat 386

                                                                       
Query: 60  atctcaactgagatggtgcttataagtagacagccatcataggcagaaatttcatttaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctcaactgagatggtgcttataagtagacagccatcataggcagaaatttcatttaga 326

                                                                       
Query: 120 aatgtttcttgtagcagtatctaatacaactggctggacaaagatgaattaatttacaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtttcttgtagcagtatctaatacaactggctggacaaagatgaattaatttacaat 266

                                                                       
Query: 180 ttacacctaaaatcataaatcaaagcagaaaaatttattagagaaaatcatcataataac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttacacctaaaatcataaatcaaagcagaaaaatttattagagaaaatcatcataataac 206

                
Query: 240 tcaaa 244
           |||||
Sbjct: 205 tcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_n09.g1 MSMg01no476_n09.g1 CHROMAT_FILE:
MSMg01no476_n09.g1 PHD_FILE: MSMg01no476_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:04 2005
         (242 letters)



>mm_chr9_10052898_10053539
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctcaaaaatactaatcctatttctgcagttaagttttcttttttttcacatagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggctcaaaaatactaatcctatttctgcagttaagttttcttttttttcacatagcca 260

                                                                       
Query: 61  agaggttcacaaagccaaggacaagaaggagaacactgtacaataactcagctgacacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggttcacaaagccaaggacaagaaggagaacactgtacaataactcagctgacacct 320

                                                                       
Query: 121 gaaactgggttagatttcctgcctgtacccaaaatagaaatattgagtggagtctaacaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gaaactgggttagatttcctgcctgtacccaaaatagaaatattgagtggagtcaaacaa 380

                                                                       
Query: 181 catttaagatctttgtttacattctctgttaaggcttttattatctattaacatttatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttaagatctttgtttacattctctgttaaggcttttattatctattaacatttatta 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)