Query= MSMg01no477_f13.b1 MSMg01no477_f13.b1 CHROMAT_FILE:
MSMg01no477_f13.b1 PHD_FILE: MSMg01no477_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:46 2005
(670 letters)
>mm_chr9_91062535_91063604
Length = 1070
Score = 1249 bits (646), Expect = 0.0
Identities = 664/670 (99%)
Strand = Plus / Minus
Query: 1 ttagcgatcctgcacactagtgttgattttcatcagttgtacacaacacaatctcatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 870 ttagcgatcctgcacactagtgttgattttcatcagttgtacacaacacaatctcataaa 811
Query: 61 gtctaatgaaaattgtattacatcaagaaaactggttttaaaattgctgaatgtgccccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gtctaatgaaaattgtattacatcaagaaaactggttttaaaattgctgaatgtgccccg 751
Query: 121 tgatagatgactggagagttcctagtgtctgaagattccagtctctgtgtataaatttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgatagatgactggagagttcctagtgtctgaagattccagtctctgtgtataaatttca 691
Query: 181 aactcaagcgaagaaaaatgctccctctacattaagttaattttcttgggacagaagacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aactcaagcgaagaaaaatgctccctctacattaagttaattttcttgggacagaagacc 631
Query: 241 ttttaagaggatgccagtttgcccaatgaatggccaaagtgtttattcagctgaggtttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttttaagaggatgccagtttgcccaatgaatggccaaagtgtttattcagctgaggtttg 571
Query: 301 gacaaaagccacatcagtgtcacagtgtctcagcacatgtgaggaaaatgcatgtggtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gacaaaagccacatcagtgtcacagtgtctcagcacatgtgaggaaaatgcatgtggtct 511
Query: 361 acagcaaattaggtgccttgccctgaggctggtgagatggggttcacttgcacttgtagc 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acagcaaattaggtgcctttccctgaggctggtgagatggggttcacttgcacttgtagc 451
Query: 421 aatgccttgatgctgtcagccgtggttttgagaagagccttagagagcttcgttacagat 480
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 450 aatgccttgatgctgtcagctgtggttttgagaagagccttagagagctttgttacagat 391
Query: 481 gtttctttcataaagtcttgtgggagaatgacattttgcaagaaatggtttgctgctctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtttctttcataaagtcttgtgggagaatgacattttgcaagaaatggtttgctgctctt 331
Query: 541 tttttcttttcttggagaaacaaagtatacccacaatcctggccaaatgctctcaaggaa 600
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 330 tttttcttctcttggagaaacaaagtatacccacaattctggccaaatgctctcaaggaa 271
Query: 601 tgatcttcatttatcccacaatagcactaaggatcatgacatttacaaagttggttttag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgatcttcatttatcccacaatagcactaaggatcatgacatttacaaagttggttttag 211
Query: 661 aactctgttg 670
||||||||||
Sbjct: 210 aactctgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_f13.g1 MSMg01no477_f13.g1 CHROMAT_FILE:
MSMg01no477_f13.g1 PHD_FILE: MSMg01no477_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:46 2005
(649 letters)
>mm_chr9_90902593_90903640
Length = 1048
Score = 1067 bits (552), Expect = 0.0
Identities = 632/674 (93%), Gaps = 26/674 (3%)
Strand = Plus / Plus
Query: 1 attcctcttctgtatcttatattgccatccttattcaattaaactatttttttctctgt- 59
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 176 attcctcttctgtatcttatattgtcatccttattcaattaaactatttttttctctgta 235
Query: 60 ttactctttcacttcattcaggaatttatatctacttcgattttattgaaaatttttcaa 119
|| |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 236 tt-ctctttgacttcattcaggaatttatatctactttgattttattgaaaaaatttcaa 294
Query: 120 tgttatttgccttaattatttgtaattttatccccttgattctcagtagaaccggttagt 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 295 tgttatttgccttaattattcgtaattttatccccttgattctcagtagaaccagttagt 354
Query: 180 gtagaattagtagggtttttgttggttgttgttgttgttgtt------------------ 221
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtagaattagtagggtttttgttggttgttgttgttgttgttgttgttgttgttgttgtt 414
Query: 222 ------ttgatgagtcatgttgccttgatttttttcatgtttcttgtgtttctacattgg 275
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 gttgttttgatgagtcatgttgccttgggttttttcatgtttcttgtgtttctacattgg 474
Query: 276 gaattacccatttggaattaaattataggttggagttggagggtgttgactggttggttg 335
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 475 gaattacccatttggaattaaattataggttggagttggaggatgttgactggttgtttg 534
Query: 336 ttgttagtcacccatcttctttcagttgaagtgtttgtcgtggtcatcatttcctccctt 395
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 535 ttgttagtcacccatcttctttcagttgaagtgtttgttgtggtcatcattccctccctt 594
Query: 396 aggctgtgaacatggactaggagtaaaccctcagggccatgggcagaatctctattagct 455
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aggctgtgaacatagactaggagtaaaccctcagggccatgggcagaatctctattagct 654
Query: 456 tgtgacaagtgcagtgttaactgcagaagcgacctcactgatgcatttcacgggctcacc 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgtgacaagtgcagtgttaactgcagaagcgacctcactgatgcatttcacgggctcacc 714
Query: 516 atgaactacaatgctgatcattaaaaataatttcttttcataaatttggggtggtggaag 575
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atgaactacagtgctgatcattaaaaataatttcttttcataaatttggggtggtggaag 774
Query: 576 aaacaaatgtcatccagtgtcttcaaaaatattagttattaaaagtaggaatggaaagaa 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaacaaatgtcatccagtgtcttcaaaaatattagttattaaaagtaggaatggaaagaa 834
Query: 636 aataaactgaataa 649
||||||| ||||||
Sbjct: 835 aataaaccgaataa 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
