BAC Information

Click to search

BAC

Clone NameMSMg01-478A08
Chromosome9 (Build37)
Map Location 122,565,373 - 122,566,034
singlet/doubletsinglet
Overlap genenone
Upstream geneVipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik
Downstream geneLOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478A08.T7 (MSMg01no478_a08.b1)MSMg01-478A08.TJ (MSMg01no478_a08.g1)
ACCAG559235AG559236
length726732
length of high quality
(start - end)
69 (62 - 130)663 (70 - 732)
definitionCHROMAT_FILE: MSMg01no478_a08.b1 PHD_FILE: MSMg01no478_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:38 2005CHROMAT_FILE: MSMg01no478_a08.g1 PHD_FILE: MSMg01no478_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTGGGGCCGCTATACGACTCACATACGGAGCGATCCGCGGAATTCTTTT
TTGTCACAGGATGGGAATATTCCATAGGCTATAGGAGGGGTGTGGGAGGG
GTAAATATGTTGGAGTTGTTCTTTAATGANCTGAATAAGAGCTTCTAATT
TCTCCTTGGGTAAAGGCCATTGTTCAACGGAGATACACTCATTTGAGACC
CAGTCAAGGCAGAGAGCATCATATCTGTTAGAATGGTTTTTTTAATTCAG
GGTGGTCTTTGGGAGGATGTTTGCTATAGGCCACCCGCGGGATATACCCA
CTTTTCNGTTAATTGACAAACACCACAGACGGGGCAGGAACAACCAATAT
CTCGCCACACCAAGGGCAGCAAGAAGGCTCAGGAGAATGGATTTGGGCCA
AGGCCCCTTATATTCATCTTCTCATACTGGCTGTCTAATCTTTTAATTTC
TTGGCCTGGGAAGGATACCAGTCTTGTTGCTGATAGTGAGTGTGTGGAAC
ATTAATAGGTACAGCCCAGGGATTAAGTCCATAGTAAGCACGGTCTAAAG
AGACACTAGCCTTGCAAAACTGATTTTGGCGATTTACAGAGATGGAGAAG
AGAATGAGTCCACGCCGAGCTCCACTAGCCCGAAATATCTTTTTTTATTT
GGTATCCAGCAGCGCACCAATATAGAAACCAACCTGAATCGCACAGGCGA
GAAAACCTTTAATCCTGAGGTGGCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTAACCTCTGAGCTATTGTTAATCCATGG
CTGTGAGGAGAAAGATTCCCCAACCCCAACCATCGTGGTCAGATCAACTA
AAGCGAGTGTCTTCATTTGTGGACACTGCTGCCTCTTTCTAAAGGAGGGG
TTCAAGAGGTCAGCACGGGACATGGGGAAGGTAGGGGTTCATATCGTTCA
GAAGTTGGGAGTTTCCAAACAGGGGAATTGGCAGGCAAATAGGCAGAGTT
ACAGAAGCAGAATTTGTATATCAAGCTGGTCATAAGAAGCTCCTGAGACA
AAGACATGTTGCAAGGTCGGCATAACAAGGTGGTCATAGCAACTTTTAGA
AACAATGGCGTGCTTCCCATTTCCTGAAGCAGGCAATGTAAAGTCATTTG
TAATTACGATTACAGGTGGGGCATAGCCCAATCCTCAAGAAACAGATTGA
GTCATAAATAGGAACAGACCTAGTTTGTTTTCACTATAAGATGGCTTAAG
ATGGAGGCAGGCTGGTTTATCACCACCTCTACAGTCCCAGAAATTTTAAA
TAATGTTTTACAGTGTTCCTTGGAGTAATCTAAGCCCTTAAAGTGGGTCA
TCAAGTTCAAAATGGCTGGCAAAGATGACTCCTGTCACTCCAGAGTGTAA
TCAAGCTAGGCATGGCTCTTGGCTTTGAGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_a08.g1 MSMg01no478_a08.g1 CHROMAT_FILE:
MSMg01no478_a08.g1 PHD_FILE: MSMg01no478_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:38 2005
         (663 letters)



>mm_chr9_122565172_122566234
          Length = 1063

 Score = 1197 bits (619), Expect = 0.0
 Identities = 652/663 (98%), Gaps = 1/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaacctctgagctattgttaatccatggctgtgaggagaaagattccccaaccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcttaacctctgagctattgttaatccatggctgtgaggagaaagattccccaaccccaa 261

                                                                       
Query: 61  ccatcgtggtcagatcaactaaagcgagtgtcttcatttgtggacactgctgcctctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccatcgtggtcagatcaactaaagcgagtgtcttcatttgtggacactgctgcctctttc 321

                                                                       
Query: 121 taaaggaggggttcaagaggtcagcacgggacatggggaaggtaggggttcatatcgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 322 taaaggaggggttcaagaggtcagcacgggacatggggaaggtaggggttcttatcgttc 381

                                                                       
Query: 181 agaagttgggagtttccaaacaggggaattggcaggcaaataggcagagttacagaagca 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 agaagttgggagtttccaaacaggggatttggcaggcaaataggcagagttacagaagca 441

                                                                       
Query: 241 gaatttgtatatcaagctggtcataagaagctcctgagacaaagacatgttgcaaggtcg 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaacaagtatatcaagctggtcataagaagctcctgagacaaagacatgttgcaaggtcg 501

                                                                       
Query: 301 gcataacaaggtggtcatagcaacttttagaaacaatggcgtgcttcccatttcctgaag 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 -cataacaaggtggtcatagcaacttttagaaacaatggcgtgcttcccatttcctgaag 560

                                                                       
Query: 361 caggcaatgtaaagtcatttgtaattacgattacaggtggggcatagcccaatcctcaag 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 caggcaatgtaaagtcatttgtaattaagattacaggtggggcatagcccaatcctcaag 620

                                                                       
Query: 421 aaacagattgagtcataaataggaacagacctagtttgttttcactataagatggcttaa 480
           ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 621 aaacagattgaatcataaataggaacggacctagtttgttttcactataagatgacttaa 680

                                                                       
Query: 481 gatggaggcaggctggtttatcaccacctctacagtcccagaaattttaaataatgtttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatggaggcaggctggtttatcaccacctctacagtcccagaaattttaaataatgtttt 740

                                                                       
Query: 541 acagtgttccttggagtaatctaagcccttaaagtgggtcatcaagttcaaaatggctgg 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 acagtgttccttggagtaatctaagcccttgaagtgggtcatcaagttcaaaatggctgg 800

                                                                       
Query: 601 caaagatgactcctgtcactccagagtgtaatcaagctaggcatggctcttggctttgag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaagatgactcctgtcactccagagtgtaatcaagctaggcatggctcttggctttgag 860

              
Query: 661 cgc 663
           |||
Sbjct: 861 cgc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)