BAC Information

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BAC

Clone NameMSMg01-478E21
Chromosome9 (Build37)
Map Location 7,158,060 - 7,158,298
singlet/doubletsinglet
Overlap geneDync2h1
Upstream genePdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, LOC100039658
Downstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478E21.T7 (MSMg01no478_e21.b1)MSMg01-478E21.TJ (MSMg01no478_e21.g1)
ACCAG559452AG559453
length732738
length of high quality
(start - end)
239 (66 - 304)622 (65 - 686)
definitionCHROMAT_FILE: MSMg01no478_e21.b1 PHD_FILE: MSMg01no478_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:00 2005CHROMAT_FILE: MSMg01no478_e21.g1 PHD_FILE: MSMg01no478_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCAAATTTCATAGGGGGCCGCGGAATTCTCAATT
ACACCATAGAGGGATCAGCTTCATATAAAAACTTATTTTTGCCTTTGAGG
TTTTTTTTGCCTTTGAGTTTTTAATTTTGGTGAGCCTATTGCATAATATT
TTAGCTGTGAGATTTTCATATCAAATGTTTCATAAGCTCTTACTAAAAAT
GGCAATTAGAGTTGCATAGTTTAAGATACTTAAAACAAGGTAAATGCGCT
TTATTTTATATAGCTTGAAAAGCAAGAGTAAAAGAGTCATTTAGCAGCAA
TTTTTAGTTTTAAAAGGTAATGACATTTCAGGGCTTCCAAGCCAGTGACA
TGCGTGCGTGGCGGCAGCACTGGAACCACCAGCTTTACAAGGCGCTGGAG
CACCAGTATCAAGTGGGTCTGGAGGCGCTCAACGAGAACCTGCCGGAGAT
CAACGTAGACTTAACCTACAAGTAAGAGGCGCTGAATCCCCAGCTTCACC
TTCAAGTTAAGCCTTTCTAGTAATTTATATTCTAAGTACTATAATTTAAG
ATGATTTAGAGTGCCACTCATCCTGTTTTTCAGACAGGGAAGGTTACAGT
TTCGGCCTCCTTTTGAAGAAATCCGGGCTAAATATTACAGAGAAATGAAG
AGGTTCATCGGAATTCCCAATCAGTTTAAGGGCGTGGGTGAGGCTGGAGA
TGAATCAATATTTTCTGTCATGATTGATAGAN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGGTTTAGTTCTATACTGCATTTTATGATATTGGG
TTGTTTCGCTTTTTGGTGGTTAGCTTCTTGAATTCTTTATATATTTTGGA
TATTAGCCCTGTATCAAATGTGGGGTTAGTAAGCATATTTTCCCAATCTG
TAGGTTGCTGATTTGTCTTATTGGCTATGTCTTTTGCCTTACAGAACTTT
TCTAGTTTCATGAAGTCCCATTTATCAATTATTGATCTTAGATCATAAGT
CATTGGATTTCTGTTTAGGCAATTTCCTCCTATGCCAATGAATTCAAGGC
ACTTTCCTACTTTCTCTTCTGTTAGATTCAGTGTATCTGGTTTTATGTTG
AGGTCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGTGACAAATATGG
GTCTATTTTCATTCTTCTACATACAGACAGTTAGATCAGCACCATTTATT
GAAGAAGCTTTCTTTTTTCCATTGTATATGTTTGGCTTCTTTGTCAAAGA
TCAAGTGACAGTAAGTGTTCTGAGTCTTGAATTCTATTCCATTGATCAAC
ATGTCTTTGTCTGTACCAATACCATGCAGTTTTTATCACTATTGCTCTGT
AGTAAAGTTTGAGGTCAGGGATGGTGATTTTCCCCAATTGTTCTTTTATT
GTTAAGAATGGGTTTTGCTATTCTGGGTTTTTTAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_e21.b1 MSMg01no478_e21.b1 CHROMAT_FILE:
MSMg01no478_e21.b1 PHD_FILE: MSMg01no478_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:00 2005
         (239 letters)



>mm_chr9_7157860_7158498
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcttcatataaaaacttatttttgcctttgaggttttttttgcctttgagtttttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagcttcatataaaaacttatttttgcctttgaggttttttttgcctttgagtttttaat 380

                                                                       
Query: 61  tttggtgagcctattgcataatattttagctgtgagattttcatatcaaatgtttcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttggtgagcctattgcataatattttagctgtgagattttcatatcaaatgtttcataa 320

                                                                       
Query: 121 gctcttactaaaaatggcaattagagttgcatagtttaagatacttaaaacaaggtaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctcttactaaaaatggcaattagagttgcatagtttaagatacttaaaacaaggtaaat 260

                                                                      
Query: 181 gcgctttattttatatagcttgaaaagcaagagtaaaagagtcatttagcagcaatttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcgctttattttatatagcttgaaaagcaagagtaaaagagtcatttagcagcaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)