BAC Information

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BAC

Clone NameMSMg01-478M22
Chromosome9 (Build37)
Map Location 94,166,858 - 94,313,357
singlet/doubletdoublet
Overlap geneEG384968
Upstream geneLOC674371, LOC384967
Downstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478M22.T7 (MSMg01no478_m22.b1)MSMg01-478M22.TJ (MSMg01no478_m22.g1)
ACCAG559836AG559837
length725726
length of high quality
(start - end)		611 (62 - 672)626 (68 - 693)
definitionCHROMAT_FILE: MSMg01no478_m22.b1 PHD_FILE: MSMg01no478_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:36 2005CHROMAT_FILE: MSMg01no478_m22.g1 PHD_FILE: MSMg01no478_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,312,747 - 94,313,357)(94,166,858 - 94,167,483)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCGAGAGGATGCGCGGAATTCTT
TATACCAAATACAGCATTTCTTTAAGGAAAATAAAGGAGAGGATGAGACA
GCTTAATTTTATTTGGACCTTTTCATCAACATATCATTTTAAATATTCTA
AAGTTGAAAGTGTCAGGGTTTTAAATTTGTAGCACACCTACCTAGAGGAC
ATTAGCAAGCTTTTATTACATATCATGCTAATTAGATAATGAACATACAA
AGAAAATGAGTGCATACTATAAAGTTTTACAAAAAGAATTAGCTTAGATT
TCTTCCCCCCTCCTGTGGATTTAACACTTTGGCTAGCTAGCTCTTCCTTT
AGCACTTTCTGCCCACTAAGTTATTAAATTAGTATACACAGAAGACTTTT
CTAAGAATCTACAGTGTAAAGCGTTAAGCAGAAATTATATGTAATGAAAA
TGAAAGCTGATGTACAGAGTGTATTAGCTGGAAGTTGTTACACTTGTGTA
TGCATGTTTGTGTGGCAGTGTTTATGTGTGTGTACCTGTGGCATCCAGTG
GTCCTCCTGGGGTGTTGTTAGCAGGGTACTATCTAGCTTGTTTGTTGAGG
CAGAATCTCTCACCTGGCTCAGGACTCAACTCAACATCAATCTCTCTCTC
TTCTCCTTGTCCCCAGTGCTCGGATTACAAAGCCTGTGTGAACACACCTG
GATTCTTTTCTCTTAATGTGTGTTC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGGTCAGGACAGTATTGATGAGAATTTAATGAG
AGTCATTACTTCAATTCCTTGTATCTGAAATTGGTTAAAGCTAGGTATTA
TGAGAGCACAAGTTGTACGCTACTCTGACATCTTAAAAGCCATTCTGTTT
GGAAAGGATATTAATAAATAGGGCGCAATCATTGAAATGTTGATGCACTT
TTGGCTTTTTAGCTAAAAGCTAAGCAATTATTGGCAGTGAAAGCTTTATC
TCTGTGTCACCACATTCCGGCTCTGAGACTGGCTTTCTATAGATTTCCAC
AATGAAAGGTCATTTCCATAGGCGGGGCCCTTTAAACATCACTTCAGCAA
CTGGGGTCACTGCCACTGCCTCCCAGGCTGCCCTGTTCACCTTCTGCCTT
CTGTTGTCTTTCTTCTCCCAGACATACAGATTTCATCAAACCAGGGACCC
AAATCCTTGCTTAGGTTGAGGAAAGTGCTGCTACGTGCTGGATCAGGATG
CTTTTCCTAGAACTCTTACTAACATGTGCCTATTCCATCTGGCTCGCTTA
TCCCAGGACAGGACTTGTATGTCAGTCTTTACGCTGATATTGCTTTGACC
TGTACTTGATGGCAGGCAGCAACTTACAATCATGATCAGGGAAGGAGATA
CAAAGGATCCCCTGTACCCAGTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_m22.b1 MSMg01no478_m22.b1 CHROMAT_FILE:
MSMg01no478_m22.b1 PHD_FILE: MSMg01no478_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:36 2005
         (611 letters)



>mm_chr9_94312547_94313557
          Length = 1011

 Score = 1143 bits (591), Expect = 0.0
 Identities = 606/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcatttctttaaggaaaataaaggagaggatgagacagcttaattttatttggacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cagcatttctttaaggaaaataaaggagaggatgagacagcttaattttatttggacctt 752

                                                                       
Query: 61  ttcatcaacatatcattttaaatattctaaagttgaaagtgtcagggttttaaatttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttcatcaacatatcattttaaatattctaaagttgaaagtgtcagggttttaaatttgta 692

                                                                       
Query: 121 gcacacctacctagaggacattagcaagcttttattacatatcatgctaattagataatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gcacacctacctagaggacattagcaagcttttattacatatcatgctaattagataatg 632

                                                                       
Query: 181 aacatacaaagaaaatgagtgcatactataaagttttacaaaaagaattagcttagattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aacatacaaagaaaatgagtgcatactataaagttttacaaaaagaattagcttagattt 572

                                                                       
Query: 241 cttcccccctcctgtggatttaacactttggctagctagctcttcctttagcactttctg 300
            || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttttccccctccagtggatttaacactttggctagctagctcttcctttagcactttctg 512

                                                                       
Query: 301 cccactaagttattaaattagtatacacagaagacttttctaagaatctacagtgtaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cccactaagttattaaattagtatacacagaagacttttctaagaatctacagtgtaaag 452

                                                                       
Query: 361 cgttaagcagaaattatatgtaatgaaaatgaaagctgatgtacagagtgtattagctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cgttaagcagaaattatatgtaatgaaaatgaaagctgatgtacagagtgtattagctgg 392

                                                                       
Query: 421 aagttgttacacttgtgtatgcatgtttgtgtggcagtgtttatgtgtgtgtacctgtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aagttgttacacttgtgtatgcatgtttgtgtggcagtgtttatgtgtgtgtacctgtgg 332

                                                                       
Query: 481 catccagtggtcctcctggggtgttgttagcagggtactatctagcttgtttgttgaggc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 331 catccagtggtcctcctggggtgttgttagcagggtactatctagcttgtttgttgagac 272

                                                                       
Query: 541 agaatctctcacctggctcaggactcaactcaacatcaatctctctctcttctccttgtc 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agaatctctcacctggttcaggactcaactcaacatcaatctctctctcttctccttgtc 212

                      
Query: 601 cccagtgctcg 611
           |||||||||||
Sbjct: 211 cccagtgctcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_m22.g1 MSMg01no478_m22.g1 CHROMAT_FILE:
MSMg01no478_m22.g1 PHD_FILE: MSMg01no478_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:36 2005
         (626 letters)



>mm_chr9_94166658_94167683
          Length = 1026

 Score = 1172 bits (606), Expect = 0.0
 Identities = 621/626 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcaggacagtattgatgagaatttaatgagagtcattacttcaattccttgtatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcaggacagtattgatgagaatttaatgagagtcattacttcaattccttgtatctg 260

                                                                       
Query: 61  aaattggttaaagctaggtattatgagagcacaagttgtacgctactctgacatcttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattggttaaagctaggtattatgagagcacaagttgtacgctactctgacatcttaaa 320

                                                                       
Query: 121 agccattctgtttggaaaggatattaataaatagggcgcaatcattgaaatgttgatgca 180
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 321 agccattctgtttggaaaggatattaataaatagggtgtaatcattgaaatgttgatgca 380

                                                                       
Query: 181 cttttggctttttagctaaaagctaagcaattattggcagtgaaagctttatctctgtgt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 cttttggctttttagctaaaagctaagcaattattagcagtgaaagctttatctctgtgt 440

                                                                       
Query: 241 caccacattccggctctgagactggctttctatagatttccacaatgaaaggtcatttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccacattccggctctgagactggctttctatagatttccacaatgaaaggtcatttcc 500

                                                                       
Query: 301 ataggcggggccctttaaacatcacttcagcaactggggtcactgccactgcctcccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggcggggccctttaaacatcacttcagcaactggggtcactgccactgcctcccagg 560

                                                                       
Query: 361 ctgccctgttcaccttctgccttctgttgtctttcttctcccagacatacagatttcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgccctgttcaccttctgccttctgttgtctttcttctcccagacatacagatttcatc 620

                                                                       
Query: 421 aaaccagggacccaaatccttgcttaggttgaggaaagtgctgctacgtgctggatcagg 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccagggacccaaatcgttgcttaggttgaggaaagtgctgctacgtgctggatcagg 680

                                                                       
Query: 481 atgcttttcctagaactcttactaacatgtgcctattccatctggctcgcttatcccagg 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcttttcctagaactcttactaatatgtgcctattccatctggctcgcttatcccagg 740

                                                                       
Query: 541 acaggacttgtatgtcagtctttacgctgatattgctttgacctgtacttgatggcaggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggacttgtatgtcagtctttacgctgatattgctttgacctgtacttgatggcaggc 800

                                     
Query: 601 agcaacttacaatcatgatcagggaa 626
           ||||||||||||||||||||||||||
Sbjct: 801 agcaacttacaatcatgatcagggaa 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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