BAC Information

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BAC

Clone NameMSMg01-480J19
Chromosome9 (Build37)
Map Location 13,072,070 - 13,072,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622505, LOC100039680, LOC665285
Downstream geneLOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480J19.T7 (MSMg01no480_j19.b1)MSMg01-480J19.TJ (MSMg01no480_j19.g1)
ACCAG561212AG561213
length721732
length of high quality
(start - end)
539 (76 - 614)268 (329 - 596)
definitionCHROMAT_FILE: MSMg01no480_j19.b1 PHD_FILE: MSMg01no480_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:58 2005CHROMAT_FILE: MSMg01no480_j19.g1 PHD_FILE: MSMg01no480_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTAATAATTGCGGCGCTAAACGACNCACATTTTCAAGGAGGGCGGAATT
CAAAATGTAACAACAAGAGGGCAGNAGTAAGTCTTTATAGGCAATTTACA
TCTTCTGTGAAAGGTGATATTCTTTAGGGTTTTTTTTTTTTCAGTATGGA
AAAGTAGCACAAGAAAAAAAAAAGAAAGAACAGAAGGGATAGAGATATTG
AAGTGTTAATTAGAACGCATAAGTGGACCCTCCGACTCCTTAGGCTGTAT
TTGTGAAGGAGACACAGCTTTGTAGGAGTGACAGATGTTGAGACTCTCAG
AATCCCCATACATTTTTTTTGCAATTACATACCTGAATGTCCCTTCCCCC
ACTAAAAAAGACAAGTGTGCATACCTTGCAGAAAATCACAGAAGCTTAAA
AATGGATATCTTTGTTGCTGTTTCTTGTTGAAATTTTGTCTTATTGACAG
TTTTGAGTTGAACTTCATTTGGAAGCATGGGTGATCTTGAAGTCTTAATT
TTTGACAAAGAAAATCCAGATAACAATTCTGGAGGTTTTGAGCCACCCAG
AGCCACGCAGCTGCTCCCAAGCATGGTAAATGGACTGTGATTGCCATCTT
GTGGTTGATTAGAACATTGCCTGCCGTAAAAAAAAATAATGAGCTGTATT
TAAATGTAAAATACAATGATTGTGGGAACAAAGCATGCAGTAACTCAGCA
AATTATACTTGCAGGTTCTTA
CCATGATATTGGGAGGCCTGGNGGCCGCCTGGTTGCAAAATCAGGAGGTG
AACTATAGAAGGTTTCAAAAAATGCTGACTTGGNCAGAAGATCCAAAAAT
TTTTTCTAGCAGCTCTCCTGACTCCGGTCAGAAAATCCATGAGCTATCCA
AACATCTTTTAGAATTTTTTCTAGCAGAGAGTGATGTCTCAACAAGAGAG
TTTTTAGAATAGCAAGAAAAAGGTGTCTAGAGCAGAACAGAACACACATA
TATTTACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAAA
GAGAGAGAACTCTGAATTTTATTTCTTCAGAACCCATGATTTGATTTTGA
GACATTTCTTTTCACTGCACCCAGACACCTCTTGTTTCAGAACCCCTCTA
CACACTGAGGCTGGTTCTTTTGCAAGTGGCTCCCAAACAGGGACTGAGAC
AGGATAGGTAAGTATGGCATCAATCTATGGTGATACTGATGTGCTTTGTC
ATACTGACACTGCAAACTTTCCCATTGTCTTATTTTCAAGCAAAAATAAT
AGTATCAGTTACTGGGGGATAGCTCAATGTTTAAAGCATTTTTCTTGGAA
ACCTGAGAACTGGAATTTGGATACCAGAGCCCAAACATGGGCATTTCCTA
TATTCAGAAGGGAATTCCTGATCAAGCCAACTTGAGGGAACTAAACTAAT
ATCGGGGGTACTGGGTTTCAATTGGAGCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_j19.g1 MSMg01no480_j19.g1 CHROMAT_FILE:
MSMg01no480_j19.g1 PHD_FILE: MSMg01no480_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:58 2005
         (268 letters)



>mm_chr9_13071870_13072537
          Length = 668

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacccatgatttgattttgagacatttcttttcactgcacccagacacctcttgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacccatgatttgattttgagacatttcttttcactgcacccagacacctcttgtttc 260

                                                                       
Query: 61  agaacccctctacacactgaggctggttcttttgcaagtggctcccaaacagggactgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacccctctacacactgaggctggttcttttgcaagtggctcccaaacagggactgag 320

                                                                       
Query: 121 acaggataggtaagtatggcatcaatctatggtgatactgatgtgctttgtcatactgac 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 acaggataggtaagtatggcatcaatctatgctgatactgatgtgctttgtcatactgac 380

                                                                       
Query: 181 actgcaaactttcccattgtcttattttcaagcaaaaataatagtatcagttactggggg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcaaactttcccattatcttattttcaagcaaaaataatagtatcagttactggggg 440

                                       
Query: 241 atagctcaatgtttaaagcatttttctt 268
           ||||||||||||||||||||||||||||
Sbjct: 441 atagctcaatgtttaaagcatttttctt 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)