Query= MSMg01no481_b21.b1 MSMg01no481_b21.b1 CHROMAT_FILE:
MSMg01no481_b21.b1 PHD_FILE: MSMg01no481_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:38 2005
(554 letters)
>mm_chr9_54739811_54740764
Length = 954
Score = 1064 bits (550), Expect = 0.0
Identities = 550/550 (100%)
Strand = Plus / Plus
Query: 5 ggaattctgaagacagctcacatgaatatctgctgtggactggggctgttgacacagcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgaagacagctcacatgaatatctgctgtggactggggctgttgacacagcca 264
Query: 65 ctcgtataagccggtgtggtgtgtccatgtggtttccacgtgcagtctggactgctcagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcgtataagccggtgtggtgtgtccatgtggtttccacgtgcagtctggactgctcagt 324
Query: 125 ggagactggcgaggttaagcagggcaagagacaagtgtgagtcaagggtgtgtgagtgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagactggcgaggttaagcagggcaagagacaagtgtgagtcaagggtgtgtgagtgag 384
Query: 185 tggacttagctcaactgcagttccacatccctctcatcaagatctcagaattctactaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggacttagctcaactgcagttccacatccctctcatcaagatctcagaattctactaca 444
Query: 245 tttcattttgctgttcctcttttttaggttttgacaaaaccaaacttgagtcaatggaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcattttgctgttcctcttttttaggttttgacaaaaccaaacttgagtcaatggaaa 504
Query: 305 aataccttaaagctgtgaaattgtttcgaaatgatgagaattcttcagaacctgaatatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataccttaaagctgtgaaattgtttcgaaatgatgagaattcttcagaacctgaatatt 564
Query: 365 ctcaggtatatgcaagtgactcacctaggagtgagtagaaggataagtgcttgtgcatag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcaggtatatgcaagtgactcacctaggagtgagtagaaggataagtgcttgtgcatag 624
Query: 425 tcctgtttataagtgtttactagctaggtatctttgggcagtgtgccccacagacttctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctgtttataagtgtttactagctaggtatctttgggcagtgtgccccacagacttctt 684
Query: 485 agattaaatgcaaatttgtagaacattccagcaatgtactaagtgcttaatgagtgatag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agattaaatgcaaatttgtagaacattccagcaatgtactaagtgcttaatgagtgatag 744
Query: 545 ctgttaatca 554
||||||||||
Sbjct: 745 ctgttaatca 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_b21.g1 MSMg01no481_b21.g1 CHROMAT_FILE:
MSMg01no481_b21.g1 PHD_FILE: MSMg01no481_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:38 2005
(585 letters)
>mm_chr9_54932195_54933178
Length = 984
Score = 1035 bits (535), Expect = 0.0
Identities = 568/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Minus
Query: 7 aaagccagcaagccttttccttttcccagcaagctgcttgcatcttccagcagcatccgt 66
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 784 aaagccagcaagccttttcctttgcccagcaagctgcttgcgtcttccagcagcatccgt 725
Query: 67 gaaaacctcggtagtaccttcgccaggcaagacgttgcattagaaggctgcctcgtgttg 126
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 724 gaaagcctcggtagtaccttcgccaggcaagacgtcgcattagaaggctgcctcctgttg 665
Query: 127 gcttgaccctgctcacttcagccagggagcataagaattaaaattccaatttcattttta 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 664 gcttgaccctgctcacttcagccagggagcatgagaattaaaattccaatttcattttta 605
Query: 187 gtcattgagtccaaaaggaaaaataaatttatcttaaaatggccttttttaaatggaaat 246
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 604 gtcattgagtccaaaaggaaaaataaatttatcttaaaatggcctttttaaaatggaaat 545
Query: 247 taaaaggaaattgagatttaaaagggcatgactttttctttttaatctaatgggtggggc 306
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 544 taaaaggaaattgagatttaaaagggcatgactttttctttttaatctaa-cggtggggc 486
Query: 307 agagtcccagtctcccgttctgagggatattctctctagccagcacagagaccctggaag 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 agagtcccagtctcccgttctgagggatattctctctagccagcacagagaccctgtaag 426
Query: 367 attgaaggtgcagaatccagggcagcagagccacagcattgagccccaaacaaggacact 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attgaaggtgcagaatccagggcagcagagccacagcattgagccccaaacaaggacact 366
Query: 427 tgctttgcctgccataggattgaggcgtagagtggctgcaccacacttcagatccctcct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgctttgcctgccataggattgaggcgtagagtggctgcaccacacttcagatccctcct 306
Query: 487 ctctgccaggcttagcacccagtgtcagatactaagagctgcagtgagcatcaaacactg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctctgccaggcttagcacccagtgtcagatactaagagctgcagtgagcatcaaacactg 246
Query: 547 ttaagcctcactgtcctgcttctccatggacagcagtga 585
||||||||||||||||||||||||||| |||||||||||
Sbjct: 245 ttaagcctcactgtcctgcttctccatagacagcagtga 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
