BAC Information

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BAC

Clone NameMSMg01-481C06
Chromosome9 (Build37)
Map Location 92,802,762 - 92,803,414
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481C06.T7 (MSMg01no481_c06.b1)MSMg01-481C06.TJ (MSMg01no481_c06.g1)
ACCAG561616AG561617
length759757
length of high quality
(start - end)
599 (28 - 626)653 (68 - 720)
definitionCHROMAT_FILE: MSMg01no481_c06.b1 PHD_FILE: MSMg01no481_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:40 2005CHROMAT_FILE: MSMg01no481_c06.g1 PHD_FILE: MSMg01no481_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTTTG
TTCAGTTTTCAGACCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTT
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATACTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTA
TTGACAGTGTCTTTTGCCTTGCAGAAACTTTGTAGTTTCATTAGGTCCCA
TTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGA
ATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTCTCTCCTCT
ACAACTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAATATGGATCGATTCACATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTAAATTCTATTCCATTGGTCTACTTGTC
TGACTCTATACCAGTACCATGCAGATTTTTATCACAATTGCTCTGTAGTA
AAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGA
GAAGAGTTTTTGCTATCCTAGGGATTTTGTTATTCCAGATGAATTTGCAG
ATTGCCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTATATTTCTATTAGCATTCTGTTTCTAAAAGA
CTAACTGTTATTGCTTTTAAAGTTTATACAGCTGAAATAAAACATGGCAA
TATTACAATATTAGCAAACATTATCTCTGTGGTAGTTTGAAAGAGAAATA
TCCATAGACTCAGTCTTACATATACTTATGATTTTGGAAATTTTGGAATG
TTAGGAGCTGCGGTCTTGCTGGTGGAAATATGTGGAAATATGACAGTGCA
CTTTGTTTTTGAGACCACTTCTTAACTATGAGCCGAAACAGCCTTTTCCC
CTTAACTTTTTTTCTTATACAACTAGGTTATGATTATAAGAAAGTGAATA
ATATTTTTTCAGAACACACACCCTAAAACACAGTAGTTTCAGTTCCTTCA
GGATCAAATGGAAATTGTTGTTTGAGAATTTCTCCCTCATAATCTTATGG
CCTCCTCTAGAGCAATGTGAAGAATTATCTGGAGCCAGAAGACATCACAT
TGTGTTTCCTCATTAATGAGCCTGGCCTACATCTAATCAGCATGGTCTAT
ACTCAAGTTCCATAGACACTGAGGCCCAAGATCCTCTTGAGCCACTTGCT
TTCTGTGGTGCTTCTGTACACAAAGCTCTATAGCCTTAACCCAAGCTCAC
CAACAAGCCTCCTCTTTACTGTGGGATGACACTCTTTTGTGTCTACGTTT
TAGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_c06.g1 MSMg01no481_c06.g1 CHROMAT_FILE:
MSMg01no481_c06.g1 PHD_FILE: MSMg01no481_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:40 2005
         (653 letters)



>mm_chr9_92802562_92803614
          Length = 1053

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatttctattagcattctgtttctaaaagactaactgttattgcttttaaagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 201 ttatatttctattagcattctgtttctaaaagactaactgttaatgcttttgaagtttat 260

                                                                       
Query: 61  acagctgaaataaaacatggcaatattacaatattagcaaacattatctctgtggtagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagctgaaataaaacatggcaatattacaatattagcaaacattatctctgtggtagtt 320

                                                                       
Query: 121 tgaaagagaaatatccatagactcagtcttacatatacttatgattttggaaattttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagagaaatatccatagactcagtcttacatatacttatgattttggaaattttgga 380

                                                                       
Query: 181 atgttaggagctgcggtcttgctggtggaaatatgtggaaatatgacagtgcactttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttaggagctgcggtcttgctggtggaaatatgtggaaatatgacagtgcactttgtt 440

                                                                       
Query: 241 tttgagaccacttcttaactatgagccgaaacagccttttccccttaactttttttctta 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgagaccacttcataactatgagccgaaacagccttttccccttaactttttttctta 500

                                                                       
Query: 301 tacaactaggttatgattataagaaagtgaataatattttttcagaacacacaccctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaactaggttatgattataagaaagtgaataatattttttcagaacacacaccctaaa 560

                                                                       
Query: 361 acacagtagtttcagttccttcaggatcaaatggaaattgttgtttgagaatttctccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacagtagtttcagttccttcaggatcaaatggaaattgttgtttgagaatttctccct 620

                                                                       
Query: 421 cataatcttatggcctcctctagagcaatgtgaagaattatctggagccagaagacatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataatcttatggcctcctctagagcaatgtgaagaattatctggagccagaagacatca 680

                                                                       
Query: 481 cattgtgtttcctcattaatgagcctggcctacatctaatcagcatggtctatactcaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattgtgtttcctcattaatgagcctggcctacatctaatcagcatggtctatactcaag 740

                                                                       
Query: 541 ttccatagacactgaggcccaagatcctcttgagccacttgctttctgtggtgcttctgt 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 ttccatagacactgaggcccaagatcctcttgagccacttgctttctgtggtacttctgt 800

                                                                
Query: 601 acacaaagctctatagccttaacccaagctcaccaacaagcctcctctttact 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acacaaagctctatagccttaacccaagctcaccaacaagcctcctctttact 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)