Query= MSMg01no481_h18.b1 MSMg01no481_h18.b1 CHROMAT_FILE:
MSMg01no481_h18.b1 PHD_FILE: MSMg01no481_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:08 2005
(703 letters)
>mm_chr9_29706289_29707391
Length = 1103
Score = 1324 bits (685), Expect = 0.0
Identities = 696/701 (99%), Gaps = 4/701 (0%)
Strand = Plus / Plus
Query: 5 gaattcataattg--tttcataaatcctcctgaacatggacattagtgcaatgctgtgca 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataattgcatt--ataaatcctcctgaacatggacattagtgcaatgctgtgca 262
Query: 63 aatagaaaaaccctgctgatatggaggctagggcaaatgcatgcttaatcatttgtttac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatagaaaaaccctgctgatatggaggctagggcaaatgcatgcttaatcatttgtttac 322
Query: 123 atgaaagacccctagttcaatgtgttcaaatagcatgcacggagacatcagagatgttga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgaaagacccctagttcaatgtgttcaaatagcatgcacggagacatcagagatgttga 382
Query: 183 tctaagtagttgtagcactcgccaatattttcatttgctttaatattcctgtgtgccaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctaagtagttgtagcactcgccaatattttcatttgctttaatattcctgtgtgccaca 442
Query: 243 cagttatttattctgtgtcattttatgtcattgttattcatatttttctataatcatcat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagttatttattctgtgtcattttatgtcattgttattcatatttttctataatcatcat 502
Query: 303 tatcatcagtatcactgatgattacactaacagtaatgacatccaaatctaggcccacaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatcatcagtatcactgatgattacactaacagtaatgacatccaaatctaggcccacaa 562
Query: 363 ttggctgtagaaacactcagggcactcactgagtccttattgcctgacattcagtgtctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttggctgtagaaacactcagggcactcactgagtccttattgcctgacattcagtgtctc 622
Query: 423 aattctgtttacacaggaaatcctgaagctcaccagggtttgggccctgggcatccatcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aattctgtttacacaggaaatcctgaagctcaccagggtttgggccctgggcatccatcc 682
Query: 483 atctctctcgtgttctttgcatgctttcccaaggaggttgcttcagttccatccttgatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atctctctcgtgttctttgcatgctttcccaaggaggttgcttcagttccatccttgatc 742
Query: 543 atgtctttattatatagattctagaatcagactctttatttccagtggtcattataacac 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 atgtctttattatatagattctagaatcagactttttatttccagtggtcattataacac 802
Query: 603 tcctctcctttcggccccttgaaaagcaggtgttgctgaggagaaaagctgtgaaatgtt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcctctcctttcggccccttgaaaagcaggtgttgctgaggagaaaagctgtgaaatgtt 862
Query: 663 atcatctggtaaggacacagccattgcaaccctaagctcat 703
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 atcatctggtaaggacacagccattgcaaccctaagctcat 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_h18.g1 MSMg01no481_h18.g1 CHROMAT_FILE:
MSMg01no481_h18.g1 PHD_FILE: MSMg01no481_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:08 2005
(292 letters)
>mm_chr9_29835208_29835899
Length = 692
Score = 501 bits (259), Expect = e-146
Identities = 268/271 (98%)
Strand = Plus / Minus
Query: 20 ccattcatcttcttagacagcggttctgtacgtggctgcagcttggggtggctcgtggac 79
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 ccattcatcttcttagacagcggttctgtacgtggctgcagcttggggtggatcgtggac 381
Query: 80 taagaaagtattctttcttctccaagcctcttcacttgctttcctggagactgcacatgc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taagaaagtattctttcttctccaagcctcttcacttgctttcctggagactgcacatgc 321
Query: 140 cagtactccctgtcgctgaagatgtgccctcacagtttaacttaaacctcacttccctac 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtactccctgtcgctgaagatgtgccctcacagtttaacttaaacctcacttccctac 261
Query: 200 ttcatgtgtcaattgtctgtctgtccaatgttataggaaactgtgtgtgtgtgtgtgtgt 259
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 ttcatgtgccaattgtctgtctgtccaatgttataggaaacagtgtgtgtgtgtgtgtgt 201
Query: 260 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 290
|||||||||||||||||||||||||||||||
Sbjct: 200 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
