BAC Information

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BAC

Clone NameMSMg01-481O09
Chromosome9 (Build37)
Map Location 15,521,629 - 15,522,164
singlet/doubletsinglet
Overlap geneSlc36a4
Upstream genePiwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891
Downstream geneMtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481O09.T7 (MSMg01no481_o09.b1)MSMg01-481O09.TJ (MSMg01no481_o09.g1)
ACCAG562196AG562197
length758755
length of high quality
(start - end)
591 (65 - 655)529 (72 - 600)
definitionCHROMAT_FILE: MSMg01no481_o09.b1 PHD_FILE: MSMg01no481_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:41 2005CHROMAT_FILE: MSMg01no481_o09.g1 PHD_FILE: MSMg01no481_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAATAGATGCACACTCAAATTGGCTGAGAAACAGTATAAAGAAATGTTCA
ACATCCTTAGACATTGAGGAAATACAGCTCAAAACTACTTTGAGAGTCCA
TCTTACACCTGTCATAATGCCTAAGATCAATAAATAACACAGTGACAGCT
CTTGTTGGTGAACAATAAAAGAGCTCTCAAAGGTATCACAATCCCTGATT
TTAAGCTATCCCATAGAGCTGTAGTAGTAAAAAATGCATGGTATTGACAT
AAAAACATACACCTTTATTCATGGAATTGAATCAAAGACGTAGCTATAAA
TTCACACACCTGATTTTTAATAAAAAGATGCTAGAAATGCCTAATAGAAG
GAAAAGAAAACATCTTTAAAAATGGTGGTGGTCTAACTGGATGTCAGCAT
GTAGAAGAATGAGGATGTGGAGTAAGGAGAACACTCCTCCATTGCTGATG
GGAGGACAAACTTGTACAACCACTGTGGAAATCAATATGGCAGTTCCTCC
AAAAACTGGGAATCAATCTAACACAAGACCCAGCTATACCACTGCTGGGC
ACATACTCAAAAGATGCTCCATCCTACCACAAAGACACTTGCTTAACTAT
GTTCTTAGCAACTTTACTCATAATAGCCAGAAATATTATTTATTTACACA
AAGCAGTATCACTCCCCCTGAATGAAAGAAACATATAGAGAGATATAGAA
ATAGAGAC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGAGAATAATGCAGCCGTGAGTCCTTCCTG
AAGAACCCGCTAGGGTTGTGCTCAGAGTTAGTCTGCAGCACACCAGGATC
GCAAGGCCTTGCTCTCAGCTCCAGCGTAGGCACACCCAGTCAGAACCCTG
GGGTGGAGCATGGCAGTGTGTTAGCAAGCCCTACCTGGCCTCTCTGAGAC
AGTCTAGCTGGTATATACTTCTGGATGATCGAGGAGACCGTCAGAGAACT
ACAGGAATGCAGATGTTTACCATAGACCTAAATCTAAGGTGCAAATGGAG
ACGTGGTGGGAAGGATGTATACAGAAAGGACAAGTGAAAGCAGGGCCCAG
GCTGGCAGCGGGAGCAAGAAGGAAGCCCAGGCTGGCAGAGGGAGGAAGAG
GGAAGCCCAGGCTGGCAAGAGGAAGAAGAAGGAAGCCTAGGAGAAGGAAG
CCATGGCTGTGCAGTGTGCCTGACTTCCCTGCTGTGACCAACAGCACCAT
GTGAAGCCTTGTCTCTGCTCTAGTCCTTCATGGCAGGGGAACATGATGGC
AGAGGAGGCCCTGTGCTGGTGGGAGCATGCGTGAGCTAGCTCACATCTTA
GTGGAGTAGGAAGTAGAGACAGGACAGAAAGGCTGGACTGTGACCCTCAA
GGCCTGCCTTGTCTAGATACTCTTGTCCAGCTTGGGCTCTACTTCTCAAG
GTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_o09.g1 MSMg01no481_o09.g1 CHROMAT_FILE:
MSMg01no481_o09.g1 PHD_FILE: MSMg01no481_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:41 2005
         (529 letters)



>mm_chr9_15521429_15522364
          Length = 936

 Score =  948 bits (490), Expect = 0.0
 Identities = 523/536 (97%), Gaps = 7/536 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaataatgcagccgtgagtccttcctgaagaacccgctagggttgtgctcagagttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaataatgcagccgtgagtccttcctgaagaacccgctagggttgtgctcagagttag 260

                                                                       
Query: 61  tctgcagcacaccaggatcgcaaggccttgctctcagctccagcgtaggcacacccagtc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgcagcacatcaggatcgcaaggccttgctctcagctccagcgtaggcacacccagtc 320

                                                                       
Query: 121 agaaccctggggtggagcatggcagtgtgttagcaagccctacctggcctctctgagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaccctggggtggagcatggcagtgtgttagcaagccctacctggcctctctgagaca 380

                                                                       
Query: 181 gtctagctggtatatacttctggatgatcgaggagaccgtcagagaactacaggaatgca 240
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctagttggtatacacttctggatgatcgaggagaccgtcagagaactacaggaatgca 440

                                                                       
Query: 241 gatgtttaccatagacctaaatctaaggtgcaaatggagacgtggtgggaaggatgtata 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgttgaccatagacctaaatctaaggtgcaaatggagacgtggtgggaaggatgtata 500

                                                                       
Query: 301 cagaaaggacaagtgaaagcagggcccaggctggcagcgggagcaagaaggaagcccagg 360
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 501 cagaaaggacaagtgaaagcagggcccaggttggcagcgggaggaagaaggaagcccagg 560

                                                                       
Query: 361 ctggcagagggaggaagagggaagcccaggctggca--ag--ag--gaag-aagaaggaa 413
           ||||||||||||||||||||||||||||||||||||  ||  ||  |||| |||||||||
Sbjct: 561 ctggcagagggaggaagagggaagcccaggctggcagcaggaagaagaaggaagaaggaa 620

                                                                       
Query: 414 gcctaggagaaggaagccatggctgtgcagtgtgcctgacttccctgctgtgaccaacag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctaggagaaggaagccatggctgtgcagtgtgcctgacttccctgctgtgaccaacag 680

                                                                   
Query: 474 caccatgtgaagccttgtctctgctctagtccttcatggcaggggaacatgatggc 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccatgtgaagccttgtctctgctctagtccttcatggcaggggaacatgatggc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 936
Length adjustment: 10
Effective length of query: 519
Effective length of database: 926
Effective search space:   480594
Effective search space used:   480594
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)