BAC Information

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BAC

Clone NameMSMg01-482B13
Chromosome9 (Build37)
Map Location 108,087,363 - 108,087,986
singlet/doubletsinglet
Overlap geneBsn
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, LOC100042108
Downstream geneDag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482B13.T7 (MSMg01no482_b13.b1)MSMg01-482B13.TJ (MSMg01no482_b13.g1)
ACCAG562348AG562349
length703714
length of high quality
(start - end)		628 (55 - 682)639 (57 - 695)
definitionCHROMAT_FILE: MSMg01no482_b13.b1 PHD_FILE: MSMg01no482_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:56 2005CHROMAT_FILE: MSMg01no482_b13.g1 PHD_FILE: MSMg01no482_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCATTTACTA
ACTCAGGGTGGCCTTGGACTAGGGCTGCCCCACCTTCCTCTGCTTTACAA
GCGCTGGGACGACAGGTGTGAGTAACCAAGCCTGGCTCTGAGTTAAAATT
TTTTTTTCTAGTGGAGATATTAGGAGAAGACAGGCTATTTAAACAAGCAA
GCAAGTGAGCAAACAAACAAACAAACAAACAAACAAAACACGATGACTAT
GGAACACTTCAGCATATGTAACAACAGAAAGGATTGTCCACTAAAGCCTT
ATGTTCCAATTACGTGGATACGGGCACGCTCAACTCAGCCAATCACATTT
CCTTTACCTCCCTTCTCACTGAGACAAATTCCAGACAGTCCTACATCCCA
TCAGCAGCATCTCACTGTATCCTTCCAAGAAATGAGCTCTGAATAAACGT
AACCATGACGACACCATCATAGCTGAGTAGGTATTTCTTTCCTCCCAGGG
AAGGTATGCTAGGAATCAAACCCAGGGCCTCAGAAATGCTGGCCAGGCAC
CCTGTCTTCAGCTAAACATACAGCCTGTTCTTTAAAAAAAAAAGATTTAT
TTTTAATTATGTGCATTTGTGTGTCTCTGTGCGTGAATATGCATCTGAGT
GCAAGTGACCGAAGAGGCCAGAAAGACTGGCTCTCTCTCAAGCTGGGTAT
AGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCACCTGCCT
CTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCAGCCCA
GCTGCTTTTTTTAACTGAAGAATTTATTTGTGTGTCTATGTGTAAGTAAA
TATATATGCATACCAGAAGGGAGCATTAAATTCCTCTGAACAGATAGCTG
TTTGTGGGATACCAGGCCTGTTATATGGGTGTTGACATTTGAACTCTGAT
CCTCCTGATTACATAGTAAGCACTATTAATTGCTGAGCCATCTCTCCAGC
CCTTGTAAAATTGTTTAGAACCAAGCTGGAGAGATGACTCCGTGAATAAG
AGCATATGCTGTTCTTGTAGAGACCCAGGTTTGGTTCCCAGCACCCACAT
GACAGCTCACAACTCTCTGTAACTCCAGTTCTAGGGGATTCACTTTCATT
CAGGTGTGGAGTGCACACATAGTCAAAATTCTCATGCACATAAAATAAAA
ATGAGTAAGCCTTTTAAAATTATTTTTTAAATTTAGTTACGATTTTAGTC
ATGTTAACATTTTTACTTAGGGGAATTTCCATTTAGCAATCCAAGTAAGA
GTTGACTTTAATTTTTTTTTAAGATTTATTTATTTATTTGTAATGTATTC
AGCGTTCAGCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_b13.b1 MSMg01no482_b13.b1 CHROMAT_FILE:
MSMg01no482_b13.b1 PHD_FILE: MSMg01no482_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:56 2005
         (628 letters)



>mm_chr9_108087156_108088182
          Length = 1027

 Score = 1112 bits (575), Expect = 0.0
 Identities = 614/629 (97%), Gaps = 6/629 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtggccttggactagggctgccccaccttcctctgctttacaagcgctgggacgaca 60
           ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 831 agggtggacttggactagggctgccccacctgcctctgctttacaagagctgggacgaca 772

                                                                       
Query: 61  ggtgtgagtaaccaagcctggctctgagtt-aaaatttttttttctagtggagatattag 119
           ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 771 ggtgtgagtgaccaagcctggctctgagttaaaaattcttttttctagtggagatattag 712

                                                                       
Query: 120 gagaagacaggctatttaaacaagcaagcaagtgagcaaacaaacaaacaaacaaacaaa 179
           ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 711 gagaagacaggctatttaaacaagcaagcaagtgag----caaacaaacaaacaaacaaa 656

                                                                       
Query: 180 caaaacacgatgactatggaacacttcagcatatgtaacaacagaaaggattgtccacta 239
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 655 caaaacacgatgactatggaacacttcagcatatgtaacaacagagaggattgtccacta 596

                                                                       
Query: 240 aagccttatgttccaattacgtggatacgggcacgctcaactcagccaatcacatttcct 299
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 595 aagcctcatgttccaattacgtggatacaggcacgctcaactcagccaatcacgtttcct 536

                                                                       
Query: 300 ttacctcccttctcactgagacaaattccagacagtcctacatcccatcagcagcatctc 359
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 535 ttacctcccttctcactgagacaaattcca-acagtcctacatcccatcagcagcatctc 477

                                                                       
Query: 360 actgtatccttccaagaaatgagctctgaataaacgtaaccatgacgacaccatcatagc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 actgtatccttccaagaaatgagctctgaataaacgtaaccatgacgacaccatcatagc 417

                                                                       
Query: 420 tgagtaggtatttctttcctcccagggaaggtatgctaggaatcaaacccagggcctcag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgagtaggtatttctttcctcccagggaaggtatgctaggaatcaaacccagggcctcag 357

                                                                       
Query: 480 aaatgctggccaggcaccctgtcttcagctaaacatacagcctgttctttaaaaaaaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaatgctggccaggcaccctgtcttcagctaaacatacagcctgttctttaaaaaaaaaa 297

                                                                       
Query: 540 gatttatttttaattatgtgcatttgtgtgtctctgtgcgtgaatatgcatctgagtgca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gatttatttttaattatgtgcatttgtgtgtctctgtgcgtgaatatgcatctgagtgca 237

                                        
Query: 600 agtgaccgaagaggccagaaagactggct 628
           |||||||||||||||||||||||||||||
Sbjct: 236 agtgaccgaagaggccagaaagactggct 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space:   628506
Effective search space used:   628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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