Query= MSMg01no483_p02.b1 MSMg01no483_p02.b1 CHROMAT_FILE:
MSMg01no483_p02.b1 PHD_FILE: MSMg01no483_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:20 2005
(692 letters)
>mm_chr9_107784495_107785586
Length = 1092
Score = 886 bits (458), Expect = 0.0
Identities = 479/486 (98%)
Strand = Plus / Minus
Query: 5 gaattcttgtatacgaacacagaggcgtagctttagtatcttattaaacaaactttgatg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattcttgtatatgaacacagaggcgtagctttagtatcttattaaacaaactttgatg 427
Query: 65 caaaatcctatctttcataaatcttgtgtggttctgtttttcgcttcttcccttggggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caaaatcctatctttcataaatcttgtgtggttctgtttttcgcttcttcccttggggtg 367
Query: 125 cccaggagtcaagttctgaggtccacatctcccctttgactgtctaggcccttgggatgt 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 366 cccaggagtcaagttctgaggtccacatcttccctttgactgtctaggcccttgggatgt 307
Query: 185 ccaggccctgaacagagctgagttctgaagtctacttctacccttggggtatccaggccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaggccctgaacagagctgagttctgaagtctacttctacccttggggtatccaggccc 247
Query: 245 agatgcacactgggcggaaaaagatgaatagaagtctggaatggctgggcaatggtgcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 246 agatgcacactgggcggaaaaagatgaatagaagtctggaatggctgggcagtggtgcaa 187
Query: 305 gcctttagtcccagcacttgggaggcaggggcaggtggatttctgagttcaaggccagcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gcctttagtcccagcacttgggaggcaggggcaggtggatttctgagttcaaggccagcc 127
Query: 365 agccctacaaagtgagttccagaacagccagggatatacagagaaaccctgtctcgaaaa 424
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 126 aggtctacaaagtgagttccaggacagccagggatatacagagaaaccctgtctcgaaaa 67
Query: 425 gccccccacccccccaaaaaaagaaatctggaatgggtgggtcagcaggattccatatag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 66 gccccccacccccccaaaaaaagaaatctggaatgggtgggtcagcaggattccatacag 7
Query: 485 cagtga 490
||||||
Sbjct: 6 cagtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_p02.g1 MSMg01no483_p02.g1 CHROMAT_FILE:
MSMg01no483_p02.g1 PHD_FILE: MSMg01no483_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:20 2005
(643 letters)
>mm_chr9_107615986_107617027
Length = 1042
Score = 1220 bits (631), Expect = 0.0
Identities = 640/643 (99%), Gaps = 1/643 (0%)
Strand = Plus / Plus
Query: 1 aatcattatcgaatgactcgtgagagtaagtctgaatagcaccggagccatttaaaagat 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aatcattatcgaatgactcgtgagagtaagtctgagtagcaccggagccatttaaaagat 260
Query: 61 aacgcgagccaagaggcccagacagagctgagagagatgacatcatacctagctcaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgcgagccaagaggcccagacagagctgagagagatgacatcatacctagctcaatgg 320
Query: 121 actggctgtcttcaccgtatgcaccctgacacccagagtcttcttgtcccccacccaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggctgtcttcaccgtatgcaccctgacacccagagtcttcttgtcccccacccaccc 380
Query: 181 attagctgttcatgtcccccctccagaggatgttctaggggtaaacaaaaagtcctctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagctgttcatgtcccccctccagaggatgttctaggggtaaacaaaaagtcctctgt 440
Query: 241 gagaccctcagctccaggcatgatgtgcatcttctgtagttcccactccagtcacatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaccctcagctccaggcatgatgtgcatcttctgtagttcccactccagtcacatgac 500
Query: 301 agggtcaggggagggcatctgtgacttggcttcctgcacccttctaggtgttccaggtgg 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggtcaggggagggcatctatgacttggcttcctgcacccttctaggtgttccaggtgg 560
Query: 361 gcaggaactggcttagacctcaccctgggtgatggcattccccaaaaacatgagaaaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaggaactggcttagacctcaccctgggtgatggcattccccaaaaacatgagaaaaac 620
Query: 421 tcctgcctccggtcctccagcccttcaacctggcccaaactgttctcttggcagcttttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctgcctccggtcctccagcccttcaacctggcccaaactgttctcttggcagcttttg 680
Query: 481 tatcagcttctctctctctagctcttccaggctgttctgtgggaactgcattgcagcctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatcagcttctctctctctagctcttccaggctgttctgtgggaactgcattgcagcctc 740
Query: 541 ttggcctcccgctgcctatacatcctctatctggctgccaggcctaccacaggctagaga 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 ttggcctcccgctgcctatacatc-tctatctggctgccaggcctaccacaggctagaga 799
Query: 601 tggaagcctgaagatgcattgccccagctaacctgagagggac 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tggaagcctgaagatgcattgccccagctaacctgagagggac 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space: 653256
Effective search space used: 653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
