BAC Information

Click to search

BAC

Clone NameMSMg01-483P13
Chromosome9 (Build37)
Map Location 32,005,146 - 32,005,582
singlet/doubletsinglet
Overlap genenone
Upstream geneAplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483P13.T7 (MSMg01no483_p13.b1)MSMg01-483P13.TJ (MSMg01no483_p13.g1)
ACCAG563772AG563773
length767852
length of high quality
(start - end)		438 (330 - 767)108 (78 - 185)
definitionCHROMAT_FILE: MSMg01no483_p13.b1 PHD_FILE: MSMg01no483_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:22 2005CHROMAT_FILE: MSMg01no483_p13.g1 PHD_FILE: MSMg01no483_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGAAAGAGTGC
GCGGAATCTTTAATTTCAACAACAAGGTCTACAAAAAGCTTGTGGGGATT
TTTAACTACGATCAAACTGGTGAACAAAGAACAGCTTAAGACCACAGCCT
ACCAACACCCAATCATGGTACATCTTTGCATTTACTTGGGCTGTCTCACT
AGGCAGTAAGGTTCTGCAGTGCACAGCATACACATCATTCACATCTCTTT
TTAGATGTAGCTGTAAGACTATTCTCCGATGCAATCATAAATGGCCTTGT
TAAGCTTTCTCATTAAATACCTTTTAGTCTGTGGACTCCCTTTATGCACA
TAGGTAGAGGTATTATTTGTAACTTATTTTAGAGTCAAACAGAAAAAGTC
TTAGAAGACACTTACCACCCATGAAGAAAGTAGAATTTGAAGAGCTCGAT
AACTACTACACTTAACTGTCTCACCAATGGCTTCTGTGAGACTGAAGTGT
CAGCCGTCACTTGGTAGGATATGTTCTGTTGGTGTACAGTAATAAGACGC
TAGGGAGTAGCAAGGTCATCTCTGAGTATCAGTGATGACAATGGCACCAA
CCTGAAAACTGTATGTCAGCAATGAGTGAAAACATATACACTTTACCCAG
GTCTGTGGCCTAAGGCAGAGCTGAGGCAGGCCGAGCTCAGTTCTGGATCT
GTAGTGTTCTAATCACGGCTGCATCGTACATTTACTGTTCCTATTAAGTG
AAACAACTTCTCTACAG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTTCTTTTCTGTACGGAGT
TTTTCCCCTGCATGCACGTTGCATGCCTGTTGGAGCTGCTGGAACTGGAG
TTATAGATAGTTGNGGAACCACTGGTGTGATGACTGGGGGGATTGAACCC
AAGTTCCTCTGCCAAGAGCAATAAAGAACTCATTTTTCTTTTTTCTTTCC
AAAAAAAGGGGTTTTTCTTTGGGGAAACCCCCTGGGGTGGTCCCGGGAAA
ATTTTTCCTTCGGAAAAACACACGGTTGGGCCCTTTGAAAACCCACAAAA
AAATTTTTTTTTTGGCCCCCTGCGGGCCCCCACCAAGGGGGGGGGGGGGG
GAAAATATAATGGGGGTGGGCGGTCTCCTCCCCCCCNCCCCCTCTTTTTC
TTTTCCCCCTCTTTTTCTTGCGCCATCCCCGTTCCGCAATCACTTCTTCT
TATTTTTTTTTTTTTTGATTCTCTATCCTGCCCTTCGCTTTTTTCTTTTT
CTTCCCTCCTCTCGCATGTATCCACTTTTTCCCTTTTTCCCTCCCCTTTT
CTCCCCCTTTTTCCATCCCTCCCCCCCTCTTTTCGTCCTTTTGCTCTACC
TGCCTTCTTCTTATTTGTGCTTTTACACACAATTACTCCTCCTTTTTTTT
CCCCGCCTCCCGTCACCCTTTTTCCTATTTTTATCCCCGCTTTCTCTTTT
CGTTTTTCTTCTCGTTTTTCCCCGCCCTCCCCTTTTTCATTTTAAAATTT
ACTCTCTTGATCCATTTACATATATCCTCTTTCATTTTCCCCGTCCCCTC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_p13.b1 MSMg01no483_p13.b1 CHROMAT_FILE:
MSMg01no483_p13.b1 PHD_FILE: MSMg01no483_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:22 2005
         (438 letters)



>mm_chr9_32004946_32005782
          Length = 837

 Score =  793 bits (410), Expect = 0.0
 Identities = 431/438 (98%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggactccctttatgcacataggtagaggtattatttgtaacttattttagagtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgtggactccctttatgcacataggtagaggtattatttgtaacttattttagagtcaaa 578

                                                                       
Query: 61  cagaaaaagtcttagaagacacttaccacccatgaagaaagtagaatttgaagagctcga 120
           ||| ||||||||||||||||||||| ||  || | |||||||||||||||||||||||||
Sbjct: 577 cag-aaaagtcttagaagacacttatcaagcagggagaaagtagaatttgaagagctcga 519

                                                                       
Query: 121 taactactacacttaactgtctcaccaatggcttctgtgagactgaagtgtcagccgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 taactactacacttaactgtctcaccaatggcttctgtgagactgaagtgtcagccgtca 459

                                                                       
Query: 181 cttggtaggatatgttctgttggtgtacagtaataagacgctagggagtagcaaggtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cttggtaggatatgttctgttggtgtacagtaataagacgctagggagtagcaaggtcat 399

                                                                       
Query: 241 ctctgagtatcagtgatgacaatggcaccaacctgaaaactgtatgtcagcaatgagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctctgagtatcagtgatgacaatggcaccaacctgaaaactgtatgtcagcaatgagtga 339

                                                                       
Query: 301 aaacatatacactttacccaggtctgtggcctaaggcagagctgaggcaggccgagctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaacatatacactttacccaggtctgtggcctaaggcagagctgaggcaggccgagctca 279

                                                                       
Query: 361 gttctggatctgtagtgttctaatcacggctgcatcgtacatttactgttcctattaagt 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 gttctggatctgtagtgttctaatcatggctgcatcgtacatttactgttcctattaagt 219

                             
Query: 421 gaaacaacttctctacag 438
           ||||||||||||||||||
Sbjct: 218 gaaacaacttctctacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space:   355212
Effective search space used:   355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |