BAC Information

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BAC

Clone NameMSMg01-485K10
Chromosome9 (Build37)
Map Location 70,090,908 - 70,261,061
singlet/doubletdoublet
Overlap geneMyo1e, Ccnb2
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneRnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485K10.T7 (MSMg01no485_k10.b1)MSMg01-485K10.TJ (MSMg01no485_k10.g1)
ACCAG565045AG565046
length761733
length of high quality
(start - end)
232 (84 - 315)242 (331 - 572)
definitionCHROMAT_FILE: MSMg01no485_k10.b1 PHD_FILE: MSMg01no485_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:40 2005CHROMAT_FILE: MSMg01no485_k10.g1 PHD_FILE: MSMg01no485_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,090,908 - 70,091,115)(70,260,822 - 70,261,061)
sequence
CGTTTCCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAAATC
CGCGGAATTCTCTACAGTTTCCCCCAATGTTTAAAGTAAATAAATGCAAA
TATTTATATAATGCTCATTCTGTGTCAGCACAGAAGGGGGATATTTAAGA
CTAGGTTTCTCTTTTTTAGAATTTTGTAAAATGTCTTTTTAAAAACAAGT
GTATGGTCTGGAGGTGTAGCTCAGGGGGAGAGAATGTTCTGTCCTGGGTT
CTGTCCCTGGCCCCTCGTCCTGAAGTCAATAGTAAGCTAAGCAGGTCACT
GAGCGACACTGGTCGGAGAAGCATGATCGTGGGAGGCACAGTCATGGGAC
ACTGTGTGCGGATGACCACACTCTGGCGTGGTATGCACTCAGTGAGATGG
CAGATGCCTTCCTGCAAAGGGAGCCAGTTTCACTTTAATTTTCTCTTCCT
CCTGAGACCCCCGGTCAGTAATCCATGCCCAGTGTCCACTTCCCTATGAA
TGAATGCCTGTTTCAGGGCCGTCTTCCCTTTGGCTCTGAAACGGCAGCTC
TTTCAATAACTCCTTTACCGGGAGTTGGTTGGGTATCCATGTTCTTTGGA
CGCGATGTTCCTCCTGAGTGCTTGGGCCCCACTCGTGTTTTTTTTTTCCG
ATCTAACGGGTAGGATTTTTTCCCAAAAACACGTCCACTCTCCTTCTCAT
TTTAATGCCCTCCCTACTCACTATTTTATCTCTAACTCATTGGTCTCGCC
TTTAATCTTGT
GGCGCGATGGTGTGGTAGGCCGGGAGGACGCCAGGCTTTCCCAATCGAGG
GACACNANANAAGGNATTGCANAAAAACGGGGGGNANGANGGNAGGAGAG
GNTGGAGCCAGGGAGCTGCCTATGCCCCCGTTACAGTCATTGCTGAGTAC
CTACTGTGTGAGAGCTAATATAAGTGTGAACAGAGCTAGCTGACTAAATA
CACAGAAGCTTACCAGGACACACAAAAGCCATATGCCATGTAAATGCCAT
GCATTGTGCCAGGAACAGGGTCCCCAGTGGGGCAGTGACTCATGTCTTCC
ACTTACTGGTGTAGGATCGTTTTTCCTTCCCCGAGGATGTCTCCATGAAG
GAAGAGAGCCTCTGTCTAGCTTTCTCTGATGCTCTGCTCTGCAAGATTGA
GGACATTGATAACGAGGACAGGGAGAACCCTCAGCTCTGCAGTGACTACG
TGAAGGACATCTACCAGTACCTCAGGCAGCTTGAGGTAGCTGGGCCTTTC
TGTTTGGGATGCACAAGCAATGTGGACTTTACAGGGATATGCGGGGAGAG
ATGCCAACTTGTTAAACTTTTAAATTCTACCAACAGGTTTTACAGTCCAT
TAATCCACACTTCTTAGATGGAAGAGATATAATTGGACGTATGCGTGCCA
TCCTGTTGGACTGGCTGGTCCAAGTCCATTCCAAGTTTCGGCTTCTGCAG
GAAACTCTCCACATGTGCATTGCCATCATGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_k10.b1 MSMg01no485_k10.b1 CHROMAT_FILE:
MSMg01no485_k10.b1 PHD_FILE: MSMg01no485_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:40 2005
         (232 letters)



>mm_chr9_70090708_70091338
          Length = 631

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtaaataaatgcaaatatttatataatgctcattctgtgtcagcacagaagggggata 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aagtaaataaatgcaaatatttatataatgcttattctgtgtcagcacagaagggggata 260

                                                                       
Query: 61  tttaagactaggtttctcttttttagaattttgtaaaatgtctttttaaaaacaagtgta 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaagactaggtttct-ttttttagaattttgtaaaatgtctttttaaaaacaagtgta 319

                                                                       
Query: 121 tggtctggaggtgtagctcagggggagagaatgttctgtcctgggttctgtccctggccc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggtctggaggtgtagctcagtgggagagaatgttctgtcctgggttctgtccctggccc 379

                                        
Query: 181 ctcgtcctgaagtcaatagtaagctaagc 209
           |||||||||||||||||||||||||||||
Sbjct: 380 ctcgtcctgaagtcaatagtaagctaagc 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 631
Length adjustment: 9
Effective length of query: 223
Effective length of database: 622
Effective search space:   138706
Effective search space used:   138706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no485_k10.g1 MSMg01no485_k10.g1 CHROMAT_FILE:
MSMg01no485_k10.g1 PHD_FILE: MSMg01no485_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:40 2005
         (242 letters)



>mm_chr9_70260620_70261261
          Length = 642

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaggatgtctccatgaaggaagagagcctctgtctagctttctctgatgctctgctctgc 62
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 442 gaggatgtctccatgaaggaagagagcctctgccaagctttctctgatgctctgctctgc 383

                                                                       
Query: 63  aagattgaggacattgataacgaggacagggagaaccctcagctctgcagtgactacgtg 122
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagatcgaggacatagataacgaggacagggagaaccctcagctctgcagtgactacgtg 323

                                                                       
Query: 123 aaggacatctaccagtacctcaggcagcttgaggtagctgggcctttctgtttgggatgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaggacatctaccagtacctcaggcagcttgaggtagctgggcctttctgtttgggatgc 263

                                                                       
Query: 183 acaagcaatgtggactttacagggatatgcggggagagatgccaacttgttaaactttta 242
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 262 acaagcaatgtggactttacagggatgtgcggggagagatgccaacttgttaaactttta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)