Query= MSMg01no486_i07.b1 MSMg01no486_i07.b1 CHROMAT_FILE:
MSMg01no486_i07.b1 PHD_FILE: MSMg01no486_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:51 2005
(602 letters)
>mm_chr9_35028424_35029422
Length = 999
Score = 1102 bits (570), Expect = 0.0
Identities = 594/602 (98%), Gaps = 3/602 (0%)
Strand = Plus / Minus
Query: 1 ggacaaggggataaaggtcatctcctatggaaatgactatgttgatcttccagaatattt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 642 ggacaaggggataaaggtcatctcctatggaaatgactatgctgatcttccagaatattt 583
Query: 61 caaacgactgacatgtgagatctccacaagaggcagatcaggtaagggaaggccaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caaacgactgacatgtgagatctccacaagaggcagatcaggtaagggaaggccaaagag 523
Query: 121 caatgaccctttgtttgtgatgaataaaaacactaccaagatagggaatgtatagtgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caatgaccctttgtttgtgatgaataaaaacactaccaagatagggaatgtatagtgtat 463
Query: 181 gaccagtttgggaaggggtgagagtgccattttgataatggggaaagaaaaacatgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaccagtttgggaaggggtgagagtgccattttgataatggggaaagaaaaacatgcaag 403
Query: 241 tgtttcttatcttcaagtcaactttcctcagcacttgcatcttaaaattaagccaggcta 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 -gattcttatcttcaagtcaactttcctcagcacttgcatcttaaaattaagccaggcta 344
Query: 301 cctgaattcagtctcttaacctactttggaaagtagtcctaacaccggccctttgaccgc 360
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 343 cctgaattcagtctcttaacctactttggaaagtagtcctaa-agtggtcctttgaccgc 285
Query: 361 catacatgtgctctggcacatgcatgccccacactcacacactcagacatgcatcacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catacatgtgctctggcacatgcatgccccacactcacacactcagacatgcatcacaca 225
Query: 421 cacaataaaaaaaaaagtcactgaagggctgtagagagatggtttgttgttaagagcact 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cacaat-aaaaaaaaagtcactgaagggctgtagagagatggtttgttgttaagagcact 166
Query: 481 tgctgttcttccagaggacccaagttcagttccagcaaccacatcaggaggctcacatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgctgttcttccagaggacccaagttcagttccagcaaccacatcaggaggctcacatct 106
Query: 541 tcacacacacacatttttgaagatgcttagttcaagtgagatgcaattaaaatttagatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tcacacacacacatttttgaagatgcttagttcaagtgagatgcaattaaaatttagatt 46
Query: 601 tc 602
||
Sbjct: 45 tc 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 999
Length adjustment: 10
Effective length of query: 592
Effective length of database: 989
Effective search space: 585488
Effective search space used: 585488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_i07.g1 MSMg01no486_i07.g1 CHROMAT_FILE:
MSMg01no486_i07.g1 PHD_FILE: MSMg01no486_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:51 2005
(242 letters)
>mm_chr9_34821495_34822136
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 239/241 (99%)
Strand = Plus / Plus
Query: 1 aagccagnctgagatgcttatcacaaccatatatataattagttcacatacaaaccatta 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccagtctgagatgcttatcacaaccatatatataattagttcacatacaaaccatta 260
Query: 61 gtatgtgaatgttttaaaagcactttcacaaagttgaatttgcctgacccttacgtccta 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgtgaacgttttaaaagcactttcacaaagttgaatttgcctgacccttacgtccta 320
Query: 121 caaagactcagtagatatattgtcttacctgttacatccatcttgaaactactctccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagactcagtagatatattgtcttacctgttacatccatcttgaaactactctccatc 380
Query: 181 tcctggttctagacaacgagttctagttgccttctcaatgaagcactccaaggccttcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctggttctagacaacgagttctagttgccttctcaatgaagcactccaaggccttcgt 440
Query: 241 g 241
|
Sbjct: 441 g 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
