Query= MSMg01no487_f20.b1 MSMg01no487_f20.b1 CHROMAT_FILE:
MSMg01no487_f20.b1 PHD_FILE: MSMg01no487_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:57 2005
(622 letters)
>mm_chr9_75229102_75230124
Length = 1023
Score = 1087 bits (562), Expect = 0.0
Identities = 605/620 (97%), Gaps = 3/620 (0%)
Strand = Plus / Minus
Query: 5 tttttgtgaaacagggtttctctgtgtagccttggctgttctggaaactcactctgtaga 64
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 827 tttttgtgagacagggtttctctgtgtagccctggctgttctggaaactcactctgtaga 768
Query: 65 ccaggctggcctcaaactcagaaatcctcctgcctctgcctccggagtgctggtattatg 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 767 ccaggctggcctcaaactcagaaatcctcctgcttctgcctccggagtgctggtattatg 708
Query: 125 gcatgtgccatcactgccccagcctgaattcaggttttctgcaagagcagtccgtgctct 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 707 gcatgtgccatcactgccccggcctgaattcaggttttctgcaagagcagtccatgctct 648
Query: 185 ccaaacccccttagtaagtttttatagtatttgtcctatttgaaccatttgttacttgag 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ccaatcccccttagtaagtttttatagtatttgtcctatttgaaccatttgttacttgag 588
Query: 245 ttagggtctgtttaggccctgagactcctctaatagaccagcctcagccatctactttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttagggtctgtttaggccctgagactcctctaatagaccagcctcagccatctactttca 528
Query: 305 aaagcctgctgaaggacaaattaatactgaaaaccagaaaaggggcagattaacaaatca 364
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 527 aaagcctgctgaaggacaaattaatactgaaaaccagaaaagggacagatgaacaaatca 468
Query: 365 aaggtccag--accacccagcctccctcccaaatctattttctaggttctaacttgaggt 422
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 467 aaagtccagtgaccacccagcctctctcccaaatctattttctaggttctaacttgaggt 408
Query: 423 tctggcttaaggaagggtccagaggtaatataacatatataataaacagtttcagtaagg 482
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 407 tctggcttaagtaagggtccagaggta-tataacatatataataaacagtttcagtaagg 349
Query: 483 tggtgtgatcatttacatatatgttcaagggagtggcactattaggtgtggctctgttgg 542
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 348 tggtgtgatcatttacatatatgttcaagggagtggcactattaggtgtggccctgttgg 289
Query: 543 agtaggtgtgtgactatgagtgtgggctttaagaccctcatcctagctgcctagaagcca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agtaggtgtgtgactatgagtgtgggctttaagaccctcatcctagctgcctagaagcca 229
Query: 603 gtattctgctagcagccttc 622
||||||||||||||||||||
Sbjct: 228 gtattctgctagcagccttc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space: 619956
Effective search space used: 619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_f20.g1 MSMg01no487_f20.g1 CHROMAT_FILE:
MSMg01no487_f20.g1 PHD_FILE: MSMg01no487_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:57 2005
(574 letters)
>mm_chr9_75064493_75065464
Length = 972
Score = 1029 bits (532), Expect = 0.0
Identities = 563/574 (98%), Gaps = 2/574 (0%)
Strand = Plus / Plus
Query: 1 caggccagcctgaggtacatagagatctgtctcaagccctccagtaccataagaggaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagcctgaggtacatagagatctgtctcaagccctccagtaccataagaggaaag 260
Query: 61 agaaatgaccaatttttttttaagactatttttaatttacttcttaactttttggttatt 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatgaccaattttttt--aagactatttttaatttacttcttaactttttggttatt 318
Query: 121 cattcataattactttcttttctaaacatgagtttttaagattgtttaaaatgaataata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cattcataattactttcttttctaaacatgagtttttaagattgtttaaaatgaataata 378
Query: 181 tttaattctataattttaatatggccacatatgatgtaatgtgaagacagcaagttgcag 240
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 379 tttaattctataattttaacatggccacatatgctgtaatgtgaagacagcaagttgcag 438
Query: 241 aacattatttgaaagcatttcatttgtataaaaatatcaaaagccagaacgtgtagaaag 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacattaccagaaagcatttcatttgtataaaaatatcaaaagccagaacgtgtagaaag 498
Query: 301 tagctcggtggcccagagcatgggtagccattgcttcattaggagatggagaagataaat 360
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 tagcttggtggcccagagcatgggtagccattgctgcattaggagatggagaagataaat 558
Query: 361 aggggcgcttttccccgagttatattttgtactgtttgaatggttttctcatttttcttc 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggggcacttttccccgagttatattttgtactgtttgaatggttttctcatttttcttc 618
Query: 421 ttaaaatgttacataactacattcttattgtaaaacttcaaacacaaaggcaagagtgcc 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 619 ttaaaatgttacataactacattcttcttgtaaaacttcaaacacaaaggcaagagtgcc 678
Query: 481 cttcagttcctccttcgctccctcccagcccaccccaggtaaaactgaaagggaggtgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttcagttcctccttcgctccctcccagcccaccccaggtaaaactgaaagggaggtgca 738
Query: 541 gcaggcccttcccactcagcagctcatgaagagc 574
||||||||||||||||||||||||||||||||||
Sbjct: 739 gcaggcccttcccactcagcagctcatgaagagc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 972
Length adjustment: 10
Effective length of query: 564
Effective length of database: 962
Effective search space: 542568
Effective search space used: 542568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
