Query= MSMg01no487_h13.b1 MSMg01no487_h13.b1 CHROMAT_FILE:
MSMg01no487_h13.b1 PHD_FILE: MSMg01no487_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:05 2005
(703 letters)
>mm_chr9_97638636_97639737
Length = 1102
Score = 1323 bits (684), Expect = 0.0
Identities = 696/700 (99%), Gaps = 1/700 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaatcctttcttgccttaatcggtctattatttcaatgcatcacgaatgactt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatcctttcttgccttaatcggtctattatttcaatgcatcacgaatgactt 263
Query: 64 tgtagctaaactgaagactctgaggcatccttgaaattctcctttgaaagctgacatttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtagctaaactgaagactctgaggcatccttgaaattctcctttgaaagctgacatttt 323
Query: 124 tttaagtcactctctaaactcaaattaaaatggttttgacatgaggtttgagatggttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttaagtcactctctaaactcaaattaaaatggttttgacatgaggtttgagatggttct 383
Query: 184 ctgcttaacaataaatactccttatgtactgagtgggcttagtcagtctaattcagaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgcttaacaataaatactccttatgtactgagtgggcttagtcagtctaattcagaaaa 443
Query: 244 gatgtcacagtgagcctgcagcaatagatgttttaagatttgggctaaatttttatctaa 303
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 gatgtcacagtgagcctgccgcaatagatgtttcaagatttgggctaaatttttatctaa 503
Query: 304 catttttttttgatgtcttcaggcacaaatggcaagtcccatttataaaatgagaaactg 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catttttttt-gatgtcttcaggcacaaatggcaagtcccatttataaaatgagaaactg 562
Query: 364 ctgatcactagccacaaacaaggtacaagaaaaatgggtaaacttggacttatttctttt 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgatcaccagccacaaacaaggtacaagaaaaatgggtaaacttggacttatttctttt 622
Query: 424 tccttgtaggatgtattaagcatagtcctgtttgggcagtatggatatttctcggctctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tccttgtaggatgtattaagcatagtcctgtttgggcagtatggatatttctcggctctg 682
Query: 484 ttcaggaaacattcctaaaatagaatgcagagaactttacctagctgaaaaccatgcata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttcaggaaacattcctaaaatagaatgcagagaactttacctagctgaaaaccatgcata 742
Query: 544 attcagcatagagagccaactgcaatccctttccactgtttgggtaaatggcttgggctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attcagcatagagagccaactgcaatccctttccactgtttgggtaaatggcttgggctc 802
Query: 604 agaaaacagaaaatttccagagagtgctgaaaagtcagattatatttctattcgattcca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agaaaacagaaaatttccagagagtgctgaaaagtcagattatatttctattcgattcca 862
Query: 664 ggacctgtcacaactggaggctctggaaatctatcctatg 703
||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggacctgtcacaactggaggctctggaaatctatcctatg 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1102
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1092
Effective search space: 756756
Effective search space used: 756756
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no487_h13.g1 MSMg01no487_h13.g1 CHROMAT_FILE:
MSMg01no487_h13.g1 PHD_FILE: MSMg01no487_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:06 2005
(681 letters)
>mm_chr9_97843742_97844823
Length = 1082
Score = 1280 bits (662), Expect = 0.0
Identities = 677/682 (99%), Gaps = 1/682 (0%)
Strand = Plus / Minus
Query: 1 ctggggagttacagttgtgagccaccatctgggtgctggaaatggaaccctggtcttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ctggggagttacagttgtgagccaccatctgggtgctggaaatggaaccctggtcttctg 928
Query: 61 gaaaagtagccagtgctcttagtcaccaagtcattgctccagctctctgtcaaatcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 gaaaagtagccagtgctcttagtcaccaagtcattgctccagctctctgtcaaatcctag 868
Query: 121 agatgagagtgatgctcgatccattcgctctctgtgatctgcttctcacttctgttttat 180
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 867 agatgagagtgatgctcgatccattcactctctgtgatctgcttctcacctctgttttat 808
Query: 181 ttctcaagggatgtgagtagacaaagtaagacttcaacctcactttcaaggtattgatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttctcaagggatgtgagtagacaaagtaagacttcaacctcactttcaaggtattgatga 748
Query: 241 gttctgtttgatgaatacaagcctccacacttcagtattcttggcgtgtggatatattgc 300
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 747 gttctgtttgatgaatacaagcctccacacttcagtattcttggcatgcggatatattgc 688
Query: 301 tatggaaaatactggaactgggaactattaacttgttttctgaagtcagtctgtggacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tatggaaaatactggaactgggaactattaacttgttttctgaagtcagtctgtggacat 628
Query: 361 agatttatagggaagtgttttgttaaaaggggaaaatgcccagagcatgaaagccaacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agatttatagggaagtgttttgttaaaaggggaaaatgcccagagcatgaaagccaacca 568
Query: 421 tacccaatatccctctcagacagaaatgttatttcagtaggtaaaataaatagtatgtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tacccaatatccctctcagacagaaatgttatttcagtaggtaaaataaatagtatgtgg 508
Query: 481 aacttctggcaaatctatcactaaaccaaaccctttttgtgctgtgtggggtgtgcatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aacttctggcaaatctatcactaaaccaaaccctttttgtgctgtgtggggtgtgcatgt 448
Query: 541 gctaaatgtgtctcaagtctcagggagtggaaaaacctaagtggacaaaaacatttgctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctaaatgtgtctcaagtctcagggagtggaaaaacctaagtggacaaaaacatttgctt 388
Query: 601 ttatagaaagggccatcttttctctgaatcttttcctctcctagggtgctgtcaagcttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttatagaaagggccatcttttctctgaatcttttcctctcctagggtgctgtcaagcttg 328
Query: 661 agaaattga-ctattacttgtg 681
||||||||| ||||||||||||
Sbjct: 327 agaaattgacctattacttgtg 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
