Query= MSMg01no487_n04.b1 MSMg01no487_n04.b1 CHROMAT_FILE:
MSMg01no487_n04.b1 PHD_FILE: MSMg01no487_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:32 2005
(542 letters)
>mm_chr9_81030623_81031563
Length = 941
Score = 932 bits (482), Expect = 0.0
Identities = 527/542 (97%), Gaps = 5/542 (0%)
Strand = Plus / Minus
Query: 3 ggaattctttagaa-tcccatataaacatttaaaaaggagaaggttactattgtgttttc 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaattctttagaagtaccatataaacatttaaaaaggagaaggttactattgtgttttc 682
Query: 62 tttgatttatatgaggaagaaaatcctaaaattttaaagatattctatatatattttgcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgatttatatgaggaagaaaatcctaaaattttaaagatattctatatatattttgcc 622
Query: 122 tttaaatcaactggaataacggtttcaatcaccttcaagctgcttcagtcttaagtcctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaatcaactggaataacggtttcaatcaccttcaagctgcttcagtcttaagtcctt 562
Query: 182 ttctaaggtgacatctaaagtaacatggattttacattattattttggtgtgtgacaatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctaaggtgacatctaaagtaacatggattttacattattattttggtgtgtgacaatt 502
Query: 242 ttccttaaaaacataaattcaccttgcatatctatcattaaataagtgttaaaataggca 301
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ttcctgaaaa-cataaattcaccttgcatatctatcag-aaataagtgttaaaataggca 444
Query: 302 aagcactataaaaatgggctaagttctctccatttatagacaggaagaaatatctttcta 361
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 gagcactataaaaatgggctaagttctctccatttatagataggaagaaatatctttcta 384
Query: 362 aaatgataacaagcacga-ggcagagttttcagccttgtgtcgtaaacaagcagagtcca 420
||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaatgataacaagta-gaaggcagagttttcagccttgtgtcgtaaacaagcagagtcca 325
Query: 421 ggcaatgcatgtttatcttaggcttagcaagttggaagagtagcaaaattgtatttaaca 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 ggcaatgcatgtttatcttaggcttagcaagttggaagagtggcaaaattgtatttaaca 265
Query: 481 aacattggtatgggtttgaaacactagtctatcccatgtatgaccctttgtcatgtatta 540
||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 264 aacattggtatggttttgaaacactagtctatctcatgtatgaccctctgtcatgtatta 205
Query: 541 ac 542
||
Sbjct: 204 ac 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_n04.g1 MSMg01no487_n04.g1 CHROMAT_FILE:
MSMg01no487_n04.g1 PHD_FILE: MSMg01no487_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:32 2005
(672 letters)
>mm_chr9_80859576_80860647
Length = 1072
Score = 1237 bits (640), Expect = 0.0
Identities = 664/672 (98%)
Strand = Plus / Plus
Query: 1 attactggcattcacaaggatagaatttcccctctcctaagcatcccacttttacaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactggcattcacaaggatagaatttcccctctcctaagcatcccacttttacaacat 260
Query: 61 atttcctgtttccataatcgattctaaagactgagaaaataaagttataattcttaattt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 atttcctgtttccataatcgattctaaagactgagaaaataaagtcataattcttaattt 320
Query: 121 ccaaaacatactttattttttctttactagtagagttttctttgcaactcaaaggtaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ccaaaacatactttattttttctttactagtagagttttctttgcaactcaaaggtagat 380
Query: 181 tagtcatacttacgtctggaagtgtgacgatttccatggagaagtttttgctaagaaatt 240
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcatatttacatctggaagtgtgacgatttccatggagaagtttttgctaagaaatt 440
Query: 241 atgcgaagacctctcagtggcaggaaatagttcatatagaagagagagttcttctctgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 atgcgaagacctctcagtggcaggaaatagttcatatagaagagagagttcctctctgcc 500
Query: 301 tggtaggaaggaaggcaggcctaagttagtgcttattcttaattctctttggccccctct 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtaggaaagaaggcaggcctaagttagtgcttattcttaattctctttggccccctct 560
Query: 361 catgtctgtttttctcttcatcatctaaacttcttactgttcagattgggtggaaattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgtctgtttttctcttcatcatctaaacttcttactgttcagattgggtggaaattaa 620
Query: 421 taacaattcaaagtcagaagctcttaggataaaattgctaatgtattccgtgatctagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacaattcaaagtcagaagctcttaggataaaattgctaatgtattccgtgatctagcc 680
Query: 481 tctgcttgtgctggtctcctctgggcaccaatctcaattttaaagcagccattccaaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgcttgtgctggtctcctctgggcaccaatctcaattttaaagcagccattccaaatg 740
Query: 541 taggtgaactttgaagtaaaatgtataggggttaatgtaagcactcctgagacaatgcct 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 taggtgaactttgaagtaaaatgtgtaggggttaatgtaagcactcctgagacaatgcct 800
Query: 601 cagatattctggctcttgtataaaggtatttcatacattttaaatgcactctctaggtaa 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 cagatattctggctcttgtataaaggtatttcatacattttaaatgcactctcttggtaa 860
Query: 661 tggttcaacccc 672
||||||||||||
Sbjct: 861 tggttcaacccc 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
